View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_84 (Length: 235)
Name: NF5876_low_84
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41747075 - 41747296
Alignment:
| Q |
1 |
ataacattgacaaagaagggaaattgatcaaacttagaaaaacatctgaaattgtttggcatggagctgatctctatggaaagtggctagatgttgatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747075 |
ataacattgacaaagaagggaaattgatcaaacttagaaaaacatctgaaattgtttggcatggagctgatctctatggaaagtggctagatgttgatct |
41747174 |
T |
|
| Q |
101 |
ttataaactctcccttcaaaacaagactccaaaagagacacttgagacattagctgagtttgcaaaaacaaggtatgagaaatataaatcaaaatattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747175 |
ttataaactctcccttcaaaacaagactccaaaagagacacttgagacattagctgagtttgcaaaaacaaggtatgagaaatataaatcaaaatattat |
41747274 |
T |
|
| Q |
201 |
cttgtgtgtattaaggtaagtc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41747275 |
cttgtgtgtattaaggtaagtc |
41747296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41738685 - 41738464
Alignment:
| Q |
1 |
ataacattgacaaagaagggaaattgatcaaacttagaaaaacatctgaaattgtttggcatggagctgatctctatggaaagtggctagatgttgatct |
100 |
Q |
| |
|
|||||||||||||||| |||||||| || ||| | | ||| || | |||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41738685 |
ataacattgacaaagacgggaaattaattaaagctcggaaagcagcagaaattgtgtggcttggagctgatctctatggaaagtggctagatgtggatct |
41738586 |
T |
|
| Q |
101 |
ttataaactctcccttcaaaacaagactccaaaagagacacttgagacattagctgagtttgcaaaaacaaggtatgagaaatataaatcaaaatattat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||| || |
|
|
| T |
41738585 |
ttataaactctctcttcaaaacaagagcatcgaagagacactcgagaccttagctgagattgcaaaaacaagatatgagaaatataaagcaaaataccat |
41738486 |
T |
|
| Q |
201 |
cttgtgtgtattaaggtaagtc |
222 |
Q |
| |
|
| ||||||||||||||| |||| |
|
|
| T |
41738485 |
catgtgtgtattaaggtcagtc |
41738464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University