View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_86 (Length: 233)

Name: NF5876_low_86
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_86
NF5876_low_86
[»] chr4 (2 HSPs)
chr4 (16-215)||(24695012-24695200)
chr4 (58-107)||(24707522-24707571)
[»] chr7 (3 HSPs)
chr7 (124-185)||(13326066-13326127)
chr7 (124-185)||(13338402-13338463)
chr7 (124-170)||(32636327-32636373)
[»] chr5 (1 HSPs)
chr5 (124-185)||(5667939-5668000)
[»] chr1 (2 HSPs)
chr1 (124-170)||(51285929-51285975)
chr1 (124-170)||(48491961-48492007)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 24695012 - 24695200
Alignment:
Q  16 gagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccnnnnnnnn 115  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24695012 gagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccaaaaaaga 24695111  T
Q  116 nnnnnnntgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacacaatcccaaagcaaataataccatag 215  Q
           |||||||||||||||||||||||||||           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24695112 caaaaaatgccctccacctcaattttgaaaccac-----------ccacaaatcttagctagataatatccacacaatcccaaagcaaataataccatag 24695200  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
Q  58 cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc 107  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  24707522 cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc 24707571  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 185  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  13326066 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 13326127  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 185  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  13338402 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 13338463  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 170  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||    
T  32636373 gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct 32636327  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 185  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  5667939 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 5668000  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 170  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  51285975 gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct 51285929  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
Q  124 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 170  Q
    |||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  48491961 gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct 48492007  T

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