View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_89 (Length: 229)
Name: NF5876_low_89
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 48273284 - 48273485
Alignment:
| Q |
14 |
gtaactcatatgcttaaggtcccaagtttttgggtggagatatggcgtctccctcacttgtgatcatggagcattgtgcttgttgtttcttttccgcgtc |
113 |
Q |
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| T |
48273284 |
gtaactcatatgctaaaggtcctaagtttttgggtggagatatggcgtctccctctcttgtgatcatggagcattgtgcttgttgtttcttttccgcgtc |
48273383 |
T |
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| Q |
114 |
ccccaaactctccaacaaagaaaaccctaccccaaagctagaaaacaagccacacgcgcacacgatcccaccaaacaaaaccatgatatggatcctagaa |
213 |
Q |
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| T |
48273384 |
cctcaaactctccaacaaagaaaaccctaccccaaagctagaaaacaagccacacgcgcacacgatcccaccaaacaaaaccatgatgtggatcctagaa |
48273483 |
T |
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| Q |
214 |
tt |
215 |
Q |
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|| |
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| T |
48273484 |
tt |
48273485 |
T |
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