View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_9 (Length: 513)
Name: NF5876_low_9
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 225 - 494
Target Start/End: Original strand, 22327861 - 22328130
Alignment:
| Q |
225 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22327861 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
22327960 |
T |
|
| Q |
325 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgacc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22327961 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgacc |
22328060 |
T |
|
| Q |
425 |
ggccaagtaaagcagttgattggctcattaaaaaagctaaatctgctatcgacgaactcgctcacctccc |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22328061 |
ggccaagtaaagcagtcgattggctcattaaaaaagctaaatctgctatcgacgaactcgctcacctccc |
22328130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 22327653 - 22327790
Alignment:
| Q |
17 |
aatatctagatttagaaccacaaccagagtcacttgaaccaccnnnnnnncggtcttcttttcttccaccactaccacaccctaatccaccaacatcatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22327653 |
aatatctagatttagaaccacaaccagagtcacttgaaccaccaaaaaaacggtcttcttttcttccaccactaccacaccctaatccaccaacatcatt |
22327752 |
T |
|
| Q |
117 |
atctttctcttccatcgaatatgcaagaaagatgggag |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22327753 |
atctttctcttccatcgaatatgcaagaaagatgggag |
22327790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 470
Target Start/End: Complemental strand, 39077414 - 39077281
Alignment:
| Q |
337 |
gcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaag |
436 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| | ||||| ||||| || ||||||||||| || || ||||| ||||||||||||||| | || ||||||| |
|
|
| T |
39077414 |
gcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaag |
39077315 |
T |
|
| Q |
437 |
cagttgattggctcattaaaaaagctaaatctgc |
470 |
Q |
| |
|
| ||||||||||| || ||||| ||||| ||||| |
|
|
| T |
39077314 |
ctgttgattggcttatcaaaaaggctaagtctgc |
39077281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 464
Target Start/End: Original strand, 32506380 - 32506585
Alignment:
| Q |
259 |
ggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgaccgcc |
358 |
Q |
| |
|
|||||||| ||||| || | |||||||||||| | | |||| ||| || ||||| ||||| |||||||||||||| |||||||| || | ||| | | |
|
|
| T |
32506380 |
ggagaaatagtggaagttgacggaggtcacattataaggtcaagaggtcgaaaagatcgtcatagtaaagtttgcacggcgaaagggccgagagacagac |
32506479 |
T |
|
| Q |
359 |
gtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagttgattggctcattaaaaa |
458 |
Q |
| |
|
| || || ||||| ||||| || || ||| |||| ||||| || |||||||| || |||| || |||| ||||||||| |||||||||||||||| || |
|
|
| T |
32506480 |
gcgttcgtctctcggcccataccgctattgaattttacgatgttcaagatcgactgggctttgataggcccagtaaagcacttgattggctcattaataa |
32506579 |
T |
|
| Q |
459 |
agctaa |
464 |
Q |
| |
|
|||||| |
|
|
| T |
32506580 |
agctaa |
32506585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 310 - 461
Target Start/End: Complemental strand, 30768467 - 30768316
Alignment:
| Q |
310 |
aaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatc |
409 |
Q |
| |
|
||||| |||||||| || |||| ||| | |||||||| || || ||| | || ||||||||||| ||||| || || |||||||||| || ||||||| |
|
|
| T |
30768467 |
aaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatc |
30768368 |
T |
|
| Q |
410 |
gtctcggctacgaccggccaagtaaagcagttgattggctcattaaaaaagc |
461 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
30768367 |
gcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
30768316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University