View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_92 (Length: 219)
Name: NF5876_low_92
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 47770473 - 47770660
Alignment:
| Q |
19 |
aagatacccatttcaattattcatgaaaatatcatcttctgcaaaatattatcatagaaaagnnnnnnnnnntt-actatacctttatatatttcagggg |
117 |
Q |
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| T |
47770473 |
aagatacccatttcaattattcatgaaaatatcatcttctgcaaaatattatcatagaaaaaaaaaatataatttactatacctttatatatttcagggg |
47770572 |
T |
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| Q |
118 |
aagcttcctgatggacaaatgattgctgtaaaaagattgttaaaaggttccagccaaggagatatggaatttaaaaatgaagtattat |
205 |
Q |
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| T |
47770573 |
aagcttcctgatggacaaatgattgctgtaaaaagattgttaaaagattccagccaaggagatgtggaatttaaaaatgaagtattat |
47770660 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 47774467 - 47774564
Alignment:
| Q |
104 |
atatatttcaggggaagcttcctgatggacaaatgattgctgtaaaaagattgttaaaaggttccagccaaggagatatggaatttaaaaatgaagta |
201 |
Q |
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| T |
47774467 |
atatatttcagggcaagctccctaatggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagta |
47774564 |
T |
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