View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-1 (Length: 1024)
Name: NF5877-Insertion-1
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 648; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 155 - 965
Target Start/End: Original strand, 34995122 - 34995940
Alignment:
| Q |
155 |
tcatccttaacaattcaattacatataagcatgggatctaactaaacaaggctcgggttttaaatcaatttctggttatgtggtcatcctctcaatttca |
254 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995122 |
tcatccttaacaattcatttacatataagcatgggatctaactaaacaaggctcgggttttaaatcaatttctggttatgtggtcatcctctcaatttca |
34995221 |
T |
|
| Q |
255 |
cccaattcaatacaaatcctactcattacttgttacatagcctgcggttgtgttacaatttt-tatttatctcaataaagaattttaattgctaccatta |
353 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34995222 |
cctaattcaatacaagtcctactcattacttgttacatagcctgcggttgtgttacaattttctatttatctcaataaagaattttaattgctaccatta |
34995321 |
T |
|
| Q |
354 |
tgtatacttgtttcttttgaaacaaacagttcttataccacaaattgggaggacaagtttattgaaattggctgaaagaatgaggagaagattttgtgcc |
453 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995322 |
cgtatacttgtttcttttgatacaaacagttcttataccacaaattgggaggacaagtttattgaaattggctgaaagaatgaggagaagattttgtgcc |
34995421 |
T |
|
| Q |
454 |
aatcttagttccacgactaacaatccatggatgcgactagatccagttcctgctggttcagaagatattagagttatgattgggaataatatggctggta |
553 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995422 |
aatcttagttccacaactaacaatccatggatgcgactagatccagttcctgctggttcagaagatattagagttatgattgggaataatatggctggta |
34995521 |
T |
|
| Q |
554 |
ttgaatcagtggttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaagcaaggtatgccc |
653 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995522 |
ttgcatcattggttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaagcaaggtatgccc |
34995621 |
T |
|
| Q |
654 |
taccacnnnnnnncttattaaaggcatagcaggacatgttctaacacatttacattc-----nnnnnnnnattgaatacttgtagtgggataaactttca |
748 |
Q |
| |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34995622 |
taacac-ttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttttttttttttattgaatacttgtagtgggataaactttca |
34995720 |
T |
|
| Q |
749 |
gaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatccttattt |
848 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995721 |
gaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatccttatt- |
34995819 |
T |
|
| Q |
849 |
actaccaccaatattccttttcagttcatatcttatcatatac--atttatgtatatattttgcttcttttatttgtttg-tggcattcatagac-tctg |
944 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
34995820 |
--taccaccaatattccttttcagttcatatcttatcatatacatatttatgtatatattttgcttcttttatttttttgttggcattcatagacttctg |
34995917 |
T |
|
| Q |
945 |
aggac-agactg-aatcttttac |
965 |
Q |
| |
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||||| |||||| |||||||||| |
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| T |
34995918 |
aggacaagactgaaatcttttac |
34995940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 317 - 850
Target Start/End: Original strand, 34986876 - 34987427
Alignment:
| Q |
317 |
tatttatctcaataaagaattttaattgctaccattatgtatacttgtttcttttgaaacaaacagttcttataccacaaattgggaggacaagtttatt |
416 |
Q |
| |
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||||||||| ||||| | |||||||||||| |||||| | || |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
34986876 |
tatttatcttaataacgcattttaattgcttccattacttgtatttgtctcttttgatacaaacagttcttataccacaaattgggaggacaagtttctt |
34986975 |
T |
|
| Q |
417 |
gaaattggctgaaagaatgaggagaagattttgtgccaatcttagttccacgactaacaatccatggatgcgactagatccagttcctgctggttcagaa |
516 |
Q |
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||||||||| || ||||||| ||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||| ||| ||||||||||||||| | |
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| T |
34986976 |
gaaattggccgatagaatgatgagaagattctgtgccaatcttggttccaccactaagaatccatggattcgactagctcctcttcctgctggttcagca |
34987075 |
T |
|
| Q |
517 |
gatattagagttatgattgggaataatatggctgg---------------tattg---aatcagtggttttttgtactactctttggcttaatgtctccc |
598 |
Q |
| |
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||||||||||||||||||| ||| |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||| |
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| T |
34987076 |
gatattagagttatgattgcaaatgatatggctggtagtacaaatgagcctattggaacatcactgtttttttgtactactctttggcttaatgtctccc |
34987175 |
T |
|
| Q |
599 |
caaatcgattattcaacttccttcggcacgagaaatccagaagcaaggtatgccctaccacnnnnnnncttattaaaggcatagcaggacatgttctaac |
698 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
34987176 |
caaatcgattattcaacttccttcggcatgagaaatccagaagcaaggtatgccctaacac-ttttttcttattaaaggcatagcaggacatgttctaac |
34987274 |
T |
|
| Q |
699 |
acatttacattc-nnnnnnnnattgaatacttgtagtgggataaactttcagaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatc |
797 |
Q |
| |
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|||||||||||| |||||||| || ||||||||||||| |||| |||||||| |||||| ||||||||||||||| ||||| |||||||||| |
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| T |
34987275 |
acatttacattctttgtttttattgaataattatagtgggataaacattcacaaaacctttctattcgagaattcgcatgcattctcaccggcaaacatc |
34987374 |
T |
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| Q |
798 |
cagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatccttatttac |
850 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
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| T |
34987375 |
cagagaatcgtgtttctttgcttagagcaagggtaagtttaatccttatttac |
34987427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 34994904 - 34995049
Alignment:
| Q |
9 |
atttgaatcatcgttgcctctgcatcagcagaatccgcccctgacctggaggatttaaacagagaaaaatcacagtgcctcatatttgtggcgagtgaga |
108 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34994904 |
atttgcatcgtcgttgcctctgcatcagcagaatccacccctgacctggaggatttaaacagagaaaaatcacggtgcctcatatttgtggcgagtgaga |
34995003 |
T |
|
| Q |
109 |
gttggaagttttacattgtttggaaaagtgaaggttaagtaacaat |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995004 |
gttggaagttttacattgtttggaaaagtgaaggttaagtaacaat |
34995049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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