View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877-Insertion-10 (Length: 795)

Name: NF5877-Insertion-10
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877-Insertion-10
NF5877-Insertion-10
[»] chr4 (8 HSPs)
chr4 (229-465)||(32649321-32649556)
chr4 (9-166)||(32649619-32649776)
chr4 (465-576)||(32649169-32649281)
chr4 (554-623)||(32649095-32649164)
chr4 (621-665)||(32225581-32225625)
chr4 (624-663)||(23976706-23976745)
chr4 (626-664)||(44376078-44376116)
chr4 (623-664)||(17558824-17558865)
[»] chr2 (3 HSPs)
chr2 (494-663)||(22136279-22136449)
chr2 (663-719)||(32073854-32073910)
chr2 (749-782)||(32073822-32073855)
[»] chr7 (2 HSPs)
chr7 (48-162)||(36605800-36605913)
chr7 (626-665)||(31097904-31097943)
[»] chr5 (7 HSPs)
chr5 (609-665)||(16349713-16349769)
chr5 (609-663)||(4082574-4082628)
chr5 (626-664)||(30096275-30096313)
chr5 (605-663)||(16222687-16222745)
chr5 (621-663)||(40951482-40951524)
chr5 (626-663)||(25099236-25099273)
chr5 (626-663)||(25158326-25158363)
[»] chr8 (4 HSPs)
chr8 (611-665)||(16367864-16367918)
chr8 (611-663)||(42308123-42308175)
chr8 (626-664)||(405353-405391)
chr8 (619-665)||(771642-771688)
[»] chr1 (4 HSPs)
chr1 (626-666)||(28947451-28947491)
chr1 (611-669)||(27840301-27840359)
chr1 (621-663)||(51387129-51387171)
chr1 (611-668)||(47250304-47250361)
[»] scaffold0896 (1 HSPs)
scaffold0896 (626-663)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (626-663)||(8657064-8657101)
chr6 (626-663)||(33289070-33289107)
[»] chr3 (1 HSPs)
chr3 (618-663)||(53693213-53693258)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 229 - 465
Target Start/End: Complemental strand, 32649556 - 32649321
Alignment:
Q  229 cattaacacttctctagcattttgtcatgcataaaatgtctcaactctacttaaaatggcaaggagatgaagcaataaagaacaaggagtagaactttct 328  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32649556 cattaacaattctctagcattttgtcatgcataaaatgtctcaactctacttaaaatggca-ggagatgaagcaataaagaacaaggagtagaactttct 32649458  T
Q  329 attataactaattagtttgatagcctgccaatcgttatccttatgcaattcctgatggttaatatcattgtatgcaggccattccgattataaagttgag 428  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  32649457 actataactaattagtttgatagcctgccaattgttatccttatgcaattcctgatggttaatatctatgtatgcaggccattccgattataaagttgag 32649358  T
Q  429 gatgcatgttgttcatggtggttaaatttaatgtgtt 465  Q
    |||||||||||||||||||||||||||||||||||||    
T  32649357 gatgcatgttgttcatggtggttaaatttaatgtgtt 32649321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 32649776 - 32649619
Alignment:
Q  9 cttttccgtttcagktgtacgta-atagtgggaatggaagagagttaattaatataggcaaatgtgggaaaattttgaggaatgaaaactaatagattat 107  Q
    |||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32649776 cttttccgtttcagttgtacgtatatggttggaatggaagagagttaattaatataggcaaatgtgggaaaaatttgaggaatgaaaactaatagattat 32649677  T
Q  108 agaatgaaaattatgttcccctgtttgattgacattcagttcattcttttgtcaagtag 166  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32649676 agaatgaaaattatgtt-ccctgtttgattgacattcagttcattcttttgtcaagtag 32649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 465 - 576
Target Start/End: Complemental strand, 32649281 - 32649169
Alignment:
Q  465 tctaatgactaaatatactgtcacataagtttagtgaaacaacaaaacacactacgttacat-cgtatatcacgagaccacacataagtctgtaacaaca 563  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  32649281 tctaatgactaagtatactgtcacataagtttagtgacacaacaaaacacacaacgctacattcgtatatcacgagaccacacataagtttgtaacaaca 32649182  T
Q  564 gacatattctctg 576  Q
    |||||||||||||    
T  32649181 gacatattctctg 32649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 623
Target Start/End: Complemental strand, 32649164 - 32649095
Alignment:
Q  554 tgtaacaacagacatattctctgtgaaaagttcattcatactaaaatatatttcaaataatgtcttaaac 623  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  32649164 tgtaacaacagacatattttctgcgaaaagttcattcatactacaatatatttcaagtaatgtcttaaac 32649095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 665
Target Start/End: Complemental strand, 32225625 - 32225581
Alignment:
Q  621 aactatatatgatacgtgcggcagcacgggtggacgatctagttt 665  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  32225625 aactatatatgacccgtgcggcagcaccggtggacgatctagttt 32225581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 663
Target Start/End: Complemental strand, 23976745 - 23976706
Alignment:
Q  624 tatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  23976745 tatatatgacccgtgcggcagcacgggtggacgatctagt 23976706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 626 - 664
Target Start/End: Complemental strand, 44376116 - 44376078
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagtt 664  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  44376116 tatatgacccgtgcggcagcacgggtggacgatctagtt 44376078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Complemental strand, 17558865 - 17558824
Alignment:
Q  623 ctatatatgatacgtgcggcagcacgggtggacgatctagtt 664  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  17558865 ctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 494 - 663
Target Start/End: Complemental strand, 22136449 - 22136279
Alignment:
Q  494 tttagtgaaacaacaaaacacactacgttacatc----gtatatcacgagaccacacataagtctgtaacaacagacatattctctgtgaaaagttcatt 589  Q
    ||||||| |||| ||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||   |    
T  22136449 tttagtggaacagcaaaacacactacgttacatttgtagtatatcacgagaccacacataagtttgtaacaacagacatattctctgcgacaagtt---t 22136353  T
Q  590 catactaaaatatatttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    ||||||| |||||||||| | ||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22136352 catactacaatatatttcgagtaatgtcttaaactatatatgacccgtgcggcaacacgggtggacgatctagt 22136279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 32073910 - 32073854
Alignment:
Q  663 tttatttattgcagactagcgacaatagtttgacactctttcgtacctatcaaaagt 719  Q
    ||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  32073910 tttatttattgcagactagtgacaatagtttgtcgctctttcatacctatcaaaagt 32073854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 32073855 - 32073822
Alignment:
Q  749 gtaactagagaatgcttatagctacctaattatg 782  Q
    ||||||||||||||||||||||||||||| ||||    
T  32073855 gtaactagagaatgcttatagctacctaagtatg 32073822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 36605800 - 36605913
Alignment:
Q  48 agagttaattaatataggcaaatgtgggaaaattttgaggaatgaaaactaatagattatagaatgaaaattatgttcccctgtttgattgacattcagt 147  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||| |||||   || ||||||||| |||||||    
T  36605800 agagtaaattaatataggcaaatgggggaaaattt-gaggaatgaaaactaatagattgtagaatcaaaatgatgttttactatttgattgagattcagt 36605898  T
Q  148 tcattcttttgtcaa 162  Q
    ||| || ||||||||    
T  36605899 tcagtcgtttgtcaa 36605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 665
Target Start/End: Original strand, 31097904 - 31097943
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagttt 665  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31097904 tatatgacccgtgcggcagcacgggtggacgatctagttt 31097943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 609 - 665
Target Start/End: Complemental strand, 16349769 - 16349713
Alignment:
Q  609 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 665  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  16349769 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagttt 16349713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 4082574 - 4082628
Alignment:
Q  609 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  4082574 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 664
Target Start/End: Complemental strand, 30096313 - 30096275
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagtt 664  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30096313 tatatgatccgtgcggcagcacgggtggacgatctagtt 30096275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 663
Target Start/End: Original strand, 16222687 - 16222745
Alignment:
Q  605 ttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    ||||| |||||| || | |||||||||| | |||||||||||||||| |||||||||||    
T  16222687 ttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 663
Target Start/End: Original strand, 40951482 - 40951524
Alignment:
Q  621 aactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  40951482 aactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 25099273 - 25099236
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25099273 tatatgacccgtgcggcagcacgggtggacgatctagt 25099236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 25158363 - 25158326
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25158363 tatatgacccgtgcggcagcacgggtggacgatctagt 25158326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 665
Target Start/End: Original strand, 16367864 - 16367918
Alignment:
Q  611 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 665  Q
    |||||| |||||||||||||||  ||||||||||||||||| |||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 42308175 - 42308123
Alignment:
Q  611 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||| || ||||||||||||  ||||||||||||| |||||||||||||||    
T  42308175 taatgtttttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 626 - 664
Target Start/End: Complemental strand, 405391 - 405353
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagtt 664  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  405391 tatatgacccgtgcggcagcacgggtggacgatctagtt 405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 665
Target Start/End: Original strand, 771642 - 771688
Alignment:
Q  619 taaactatatatgatacgtgcggcagcacgggtggacgatctagttt 665  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  771642 taaactatatatgacccgtgcggcagcacgggtagacgacctagttt 771688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 666
Target Start/End: Complemental strand, 28947491 - 28947451
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagttta 666  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  28947491 tatatgacccgtgcggcagcacgggtggacgatctagttta 28947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 27840359 - 27840301
Alignment:
Q  611 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttattt 669  Q
    |||||| |||||||||| ||||  |||||| |||||||||| |||||||||||| ||||    
T  27840359 taatgttttaaactataaatgacccgtgcgacagcacgggtagacgatctagttcattt 27840301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 663
Target Start/End: Complemental strand, 51387171 - 51387129
Alignment:
Q  621 aactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  51387171 aactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 47250304 - 47250361
Alignment:
Q  611 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttatt 668  Q
    |||||| || ||||||||||||  ||||||||||| ||| ||||||||||||| ||||    
T  47250304 taatgtttttaactatatatgacccgtgcggcagctcggatggacgatctagtatatt 47250361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Original strand, 1109 - 1146
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||  |||||||||||||||||||||||||||||    
T  1109 tatatgacccgtgcggcagcacgggtggacgatctagt 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 8657101 - 8657064
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||  |||||||||||||||||||||||||||||    
T  8657101 tatatgacccgtgcggcagcacgggtggacgatctagt 8657064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 33289107 - 33289070
Alignment:
Q  626 tatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33289107 tatatgacccgtgcggcagcacgggtggacgatctagt 33289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 663
Target Start/End: Original strand, 53693213 - 53693258
Alignment:
Q  618 ttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 663  Q
    |||||||||||||||   |||||||||||||||| |||||||||||    
T  53693213 ttaaactatatatgacctgtgcggcagcacgggtagacgatctagt 53693258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University