View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877-Insertion-11 (Length: 720)

Name: NF5877-Insertion-11
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877-Insertion-11
NF5877-Insertion-11
[»] chr7 (7 HSPs)
chr7 (8-274)||(28382724-28382997)
chr7 (14-319)||(28387033-28387344)
chr7 (256-385)||(28382469-28382598)
chr7 (641-720)||(28382136-28382215)
chr7 (308-385)||(28386936-28387013)
chr7 (479-570)||(28382286-28382377)
chr7 (479-570)||(28386754-28386845)
[»] chr2 (2 HSPs)
chr2 (189-383)||(2037826-2038020)
chr2 (533-572)||(2037642-2037681)
[»] chr4 (2 HSPs)
chr4 (189-385)||(28657519-28657719)
chr4 (533-570)||(28657858-28657895)
[»] chr8 (2 HSPs)
chr8 (191-383)||(6816724-6816914)
chr8 (195-385)||(44667527-44667717)
[»] chr6 (3 HSPs)
chr6 (256-383)||(34518880-34518999)
chr6 (238-285)||(21508389-21508436)
chr6 (542-572)||(21508132-21508162)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 28382997 - 28382724
Alignment:
Q  8 acttacttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctcgttttaagttctatatctttcattacgtgtttctctctat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  28382997 acttacttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctccttccaagttctatatctttcattacgtgtttctctctat 28382898  T
Q  108 tttttaaacgtgttatcagtaatgaatgactgagagggaaaaaggaaactgacatttattcatagagtgcaaccccctaccaacttccttcctaaaatag 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28382897 tttttaaatgtgttatcagtaatgaatgactgagagggaaaaaggaaaccgacagttattcatagagtgcaaccccctaccaacttccttcctaaaatag 28382798  T
Q  208 tggaactaaatcatggattgggaagtggt-------ggtcatatgaacagggaagaagttgtatcttctacttt 274  Q
    ||||||||||||||||| ||| |||||||       |||||||||||||||||||||||||||||| |||||||    
T  28382797 tggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaacagggaagaagttgtatctcctacttt 28382724  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 28387344 - 28387033
Alignment:
Q  14 ttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctcgttttaagttctatatctttcattacgtgtttctctctatttttta 113  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  28387344 ttggggattaatc-tgaaatgactcttatttgcttgtcccttctcttgtttctccttctaagttttatatctttcattacgtgtttctctctatttttta 28387246  T
Q  114 aacgtgttatcagtaatgaatgactgagagggaaaaaggaaactgacatttattcatagagtgcaaccccctaccaacttccttcctaaaatagtggaac 213  Q
    || ||| |||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  28387245 aatgtgatatcagtaatgaatgactgagaggaaaaaagggaacggacaattattcatagagtgtaaccctctatcaacttccttcctaaaataatggaac 28387146  T
Q  214 taaatcatggattgggaagtggt-------ggtcatatgaacagggaagaagttgtatcttctactttctagtattgaaggaacatgaacgtgtgctttc 306  Q
    ||||||||||| ||| ||||| |       ||||||||||| | |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  28387145 taaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatctactactttctagtatggaatgaacatgaacgtgtgctttc 28387046  T
Q  307 taactagtgacta 319  Q
    ||||||| |||||    
T  28387045 taactagcgacta 28387033  T

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Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 28382598 - 28382469
Alignment:
Q  256 aagttgtatcttctactttctagtattgaaggaacatgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaa 355  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28382598 aagttgtatctcctactttctaatattgaaggaacatgaacgtgtgctttctaactagtgactagcataaaactataaacaatatataattatagtaaaa 28382499  T
Q  356 ctaagttagtaacttaataaatgacaccca 385  Q
    |||||||||||||||| |||||||||||||    
T  28382498 ctaagttagtaacttattaaatgacaccca 28382469  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 641 - 720
Target Start/End: Complemental strand, 28382215 - 28382136
Alignment:
Q  641 gggatcttacactacacttatcgcttcaaattttctgtcattaatccttctgtgtgtcatgtatttgttgaatcaccatc 720  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28382215 gggatcttacactacacctatcgcttcaaattttctgtcattaatccttctgtgtgtcatgtatttgttgaagcaccatc 28382136  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 28387013 - 28386936
Alignment:
Q  308 aactagtgactaacataaaactataaacaatatataattatagtaaaactaagttagtaacttaataaatgacaccca 385  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28387013 aactagtgactagcataaacctataaacaatatataattatagtaaaactaagatagtaacttaataaatgacaccca 28386936  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 479 - 570
Target Start/End: Complemental strand, 28382377 - 28382286
Alignment:
Q  479 ggaacgatgatttgaccacatagtaaataaaatcaatttgaaaatannnnnnnattaaaagaaaaataatatcatcactcaataaatcatac 570  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||    
T  28382377 ggaacgatgatttgatcacatagtaaataaaatcaatttgaaaatatttttttattaaaagagaaataatatcatcactcaataaatcatac 28382286  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 479 - 570
Target Start/End: Complemental strand, 28386845 - 28386754
Alignment:
Q  479 ggaacgatgatttgaccacatagtaaataaaatcaatttgaaaatannnnnnnattaaaagaaaaataatatcatcactcaataaatcatac 570  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||       ||||| ||| |||||||||||||||||||||||||||||    
T  28386845 ggaacgatgatttgatcacatagtaaataaaatcaatttgaaaatatttttttattaagagagaaataatatcatcactcaataaatcatac 28386754  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 383
Target Start/End: Complemental strand, 2038020 - 2037826
Alignment:
Q  189 aacttccttcctaaaatagtggaactaaatcatggattgggaagtggtgg-------tcatatgaacagggaagaagttgtatcttctactttctagtat 281  Q
    ||||||||| ||||||  |||||||||||||||||  ||| ||||||||        ||||||||||| ||||||||||||||||| ||||||||||||     
T  2038020 aacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaagttgtatcttatactttctagtaa 2037921  T
Q  282 tgaaggaacatgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaactaagttagtaacttaataaatgaca 381  Q
    | ||  ||||||| ||||||||| ||||||||| |||| |||||||||| ||||       ||||||| ||||| |||||||||||||||||||||||||    
T  2037920 taaataaacatgatcgtgtgcttcctaactagtaactagcataaaactagaaac-------aattataataaaattaagttagtaacttaataaatgaca 2037828  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 2037681 - 2037642
Alignment:
Q  533 ttaaaagaaaaataatatcatcactcaataaatcatactg 572  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  2037681 ttaagagagaaataatatcatcactcaataaatcatactg 2037642  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 189 - 385
Target Start/End: Original strand, 28657519 - 28657719
Alignment:
Q  189 aacttccttcctaaaatagtggaactaaatcatggattgggaagtggtg-------gtcatatgaacagggaagaagttgtatcttctactttctagtat 281  Q
    |||||| ||||||||| ||||||||||||||||||| ||| ||||||||       |||||||||| | |||||||| ||||||| |||||||||||||     
T  28657519 aacttctttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgtatctcctactttctagtag 28657618  T
Q  282 tgaaggaa----catgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaactaagttagtaacttaataaat 377  Q
    |||| |||    ||||| ||||| ||| ||||||||| |||| |||||||||| ||||       ||||||| |||||||||||||||||||||||||||    
T  28657619 tgaatgaatgatcatgaccgtgttcttcctaactagtaactagcataaaactagaaac-------aattataataaaactaagttagtaacttaataaat 28657711  T
Q  378 gacaccca 385  Q
    | ||||||    
T  28657712 gtcaccca 28657719  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 28657858 - 28657895
Alignment:
Q  533 ttaaaagaaaaataatatcatcactcaataaatcatac 570  Q
    |||||||| |||||||||||||||||||||||||||||    
T  28657858 ttaaaagagaaataatatcatcactcaataaatcatac 28657895  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 191 - 383
Target Start/End: Complemental strand, 6816914 - 6816724
Alignment:
Q  191 cttccttcctaaaatagtggaactaaatcatggattgggaagtggtg-------gtcatatgaacagggaagaagttgtatcttctactttctagtattg 283  Q
    ||||||| ||||||  |||||||||| ||||||| ||| ||||||||       ||||||||||| |  ||||| |||||||| ||||||||||||| ||    
T  6816914 cttccttgctaaaaatgtggaactaattcatggagtggaaagtggtgtgtcatggtcatatgaaccg--aagaaattgtatctcctactttctagtaatg 6816817  T
Q  284 aaggaacatgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaactaagttagtaacttaataaatgacacc 383  Q
    ||  ||||||| | ||||||| ||||||||| |||| |||||||||| ||||       ||||||| |||||||||||||||||||||||||||| ||||    
T  6816816 aataaacatgatcatgtgcttcctaactagtaactagcataaaactagaaac-------aattataataaaactaagttagtaacttaataaatgtcacc 6816724  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 385
Target Start/End: Complemental strand, 44667717 - 44667527
Alignment:
Q  195 cttcctaaaatagtggaactaaatcatggattgggaagtggtg-------gtcatatgaacagggaagaagttgtatcttctactttctagtattgaagg 287  Q
    ||||||||||  |||||||||||||||||| ||| ||||||||       ||||||| ||||||||||||||||||||| ||||||||||||| |||| |    
T  44667717 cttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatataaacagggaagaagttgtatctcctactttctagtaatgaatg 44667618  T
Q  288 aacatgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaactaagttagtaacttaataaatgacaccca 385  Q
    || ||||  |||||||| |||||  || | || ||||||| || ||||       ||||||| ||||||||  | |||||||||||||||| ||||||    
T  44667617 aaaatgagtgtgtgcttcctaaccggtaaatagcataaaattagaaac-------aattataataaaactacatcagtaacttaataaatgtcaccca 44667527  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 256 - 383
Target Start/End: Original strand, 34518880 - 34518999
Alignment:
Q  256 aagttgtatcttctactttctagtattgaaggaacatgaacgtgtgctttctaactagtgactaacataaaactataaacaatatataattatagtaaaa 355  Q
    ||||||||||| ||||||||||||| ||||  || |||| ||||||||| ||||||||| |||||||| |||||| ||||       ||||||| |||||    
T  34518880 aagttgtatctcctactttctagtaatgaataaatatgatcgtgtgcttcctaactagtaactaacat-aaactagaaac-------aattataataaaa 34518971  T
Q  356 ctaagttagtaacttaataaatgacacc 383  Q
    ||||||||||||||||||||||| ||||    
T  34518972 ctaagttagtaacttaataaatgtcacc 34518999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 21508436 - 21508389
Alignment:
Q  238 gtcatatgaacagggaagaagttgtatcttctactttctagtattgaa 285  Q
    |||||||||| |||||||||||||||||| ||||||| ||||| ||||    
T  21508436 gtcatatgaatagggaagaagttgtatctcctactttttagtaatgaa 21508389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 572
Target Start/End: Complemental strand, 21508162 - 21508132
Alignment:
Q  542 aaataatatcatcactcaataaatcatactg 572  Q
    |||||||||||||||||||||||||||||||    
T  21508162 aaataatatcatcactcaataaatcatactg 21508132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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