View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-12 (Length: 581)
Name: NF5877-Insertion-12
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 48769063 - 48769488
Alignment:
| Q |
8 |
acatacttattgctgatttggtgtcagaaatgaattttgggtgactgatcaaattgctaaacaagttttgcttaacatactcagcagcacgaacaccgcc |
107 |
Q |
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| T |
48769063 |
acatacttattgctgatttggtgtcagatatgaattttgggtgactgatcaaattgctaaacaagttttgcttaacatactcagcagcacgaacaccgcc |
48769162 |
T |
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| Q |
108 |
atgacctaaaagagttataaacaagtttatatataggcataaccaatatgaaataactcttacgcagttaatttcccaggccaaacaaagaaacactaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
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| T |
48769163 |
atgacctaaaagagttataaacaagtttatatataggcataaacaatatgaaataactcttacacggttaatttctcaggccaaacaaagaaacactaat |
48769262 |
T |
|
| Q |
208 |
agactaaacaattattcctatatggaataaatggaggttcaaaaataacaacaaataggaggatgaagcatttattctggtcttagccaaccaaaggttt |
307 |
Q |
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| T |
48769263 |
agactaaacaattattcctatatggaataaatggaggttcaaaaataacaacaaataggaggatgaagcatttattctggtcttagccaaccaaaggttt |
48769362 |
T |
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| Q |
308 |
gcgaattggaaaaccttcaaaaatattctttagcggtggcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagac |
407 |
Q |
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| T |
48769363 |
gcgaactggaaaaccttcaaaaatattctttagcggtggcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagac |
48769462 |
T |
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| Q |
408 |
aaaaatacaaaatcaggctatatatt |
433 |
Q |
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| T |
48769463 |
aaaagtacaaaatcaggctatatatt |
48769488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 496 - 581
Target Start/End: Original strand, 48769484 - 48769569
Alignment:
| Q |
496 |
atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaa |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48769484 |
atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaa |
48769569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3410554 - 3410448
Alignment:
| Q |
8 |
acatacttattgctgatttggtgtcagaaatgaattttgggtgactgatcaaattgctaaacaagttttgcttaacatactcagcagcacgaacaccgcc |
107 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| || ||||||||||| ||||| | ||||||||| |||||||||||||| ||| |||| || |
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| T |
3410554 |
acatacctattgcagatttggtgtcagaaatgaattttggatggctgatcaaattactaaataggttttgcttgacatactcagcagcgcgagcaccacc |
3410455 |
T |
|
| Q |
108 |
atgacct |
114 |
Q |
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||||||| |
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| T |
3410454 |
atgacct |
3410448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 3436270 - 3436376
Alignment:
| Q |
8 |
acatacttattgctgatttggtgtcagaaatgaattttgggtgactgatcaaattgctaaacaagttttgcttaacatactcagcagcacgaacaccgcc |
107 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||| || ||||||||||| ||||| | ||||||||| |||||||||||||| ||| |||| || |
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| T |
3436270 |
acatacctattgcagatttggtgtcagaaatgaattttggatggctgatcaaattactaaataggttttgcttgacatactcagcagcgcgagcaccacc |
3436369 |
T |
|
| Q |
108 |
atgacct |
114 |
Q |
| |
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||||||| |
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| T |
3436370 |
atgacct |
3436376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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