View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877-Insertion-13 (Length: 536)

Name: NF5877-Insertion-13
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877-Insertion-13
NF5877-Insertion-13
[»] chr1 (6 HSPs)
chr1 (204-536)||(40981721-40982055)
chr1 (9-123)||(40982074-40982188)
chr1 (158-322)||(40968484-40968650)
chr1 (155-321)||(14267462-14267630)
chr1 (459-536)||(14267239-14267316)
chr1 (454-536)||(40968271-40968353)
[»] chr4 (11 HSPs)
chr4 (132-322)||(20439701-20439894)
chr4 (174-322)||(20278480-20278630)
chr4 (156-322)||(20461833-20462001)
chr4 (132-322)||(20450180-20450370)
chr4 (156-322)||(20443330-20443498)
chr4 (156-322)||(20476040-20476208)
chr4 (168-322)||(20431041-20431197)
chr4 (387-536)||(20278707-20278857)
chr4 (463-533)||(37067519-37067589)
chr4 (387-528)||(20439978-20440120)
chr4 (459-536)||(20476358-20476435)
[»] chr7 (2 HSPs)
chr7 (155-321)||(45484422-45484590)
chr7 (459-536)||(45484194-45484271)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 204 - 536
Target Start/End: Complemental strand, 40982055 - 40981721
Alignment:
Q  204 gtatgctaacaagcacattccaacaacatttttcagatatcaacccataaagatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |    
T  40982055 gtatgctaacaagcacattccaacaacatttttcagatatcaacccataaagatgataaattgtgaaaagtgacaagatgtaggttgtcaatattatctt 40981956  T
Q  304 ccatgcttagaaactgcatnnnnnnnnn-gtattgcatatgagtaaataaatatggaacttatcattnnnnnnnnnnnnnnngattatgaaacttacatg 402  Q
    |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||    
T  40981955 ccatgcttagaaactgcataaaaaaaaaagtattgcatatgagtaaataaatatggaacttatcattaaaaaaagaaaaaaagattatgaaacttacatg 40981856  T
Q  403 aataatttcataactgatagttaatgatttaacactaaaaagacctctcaat-gtgaatacaaactgttaaaatccacatgcttagaaatgcgaagagta 501  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  40981855 aataatttcataactgatagttaatgatttaacactagaaagatctctcaagagtgaatacaaactgttaaaatccacatgcttagaaatgcgaagagta 40981756  T
Q  502 gctcgatcgagattggacaagtttgtaaactcata 536  Q
    ||||||||||||||| |||||||||||||||||||    
T  40981755 gctcgatcgagattgcacaagtttgtaaactcata 40981721  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 40982188 - 40982074
Alignment:
Q  9 catgcaaaattaattannnnnnnatcggttttatttgcaaattccaagtatctttcgctcaatctttgcatgtcttatgatagattttgagcttattaat 108  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  40982188 catgcaaaattaattatttttttatcggttttatttgcaaattccaagtatctttcgctcaatctttgcacgtcttgtgatagattttgagcttattaat 40982089  T
Q  109 atattttacaatttt 123  Q
    |||||||||||||||    
T  40982088 atattttacaatttt 40982074  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 158 - 322
Target Start/End: Complemental strand, 40968650 - 40968484
Alignment:
Q  158 atacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagata--tcaacccataaag 255  Q
    |||||||||||||||||||||| || |||||||||||||||||||   | |||||| |||| ||||||||  || || |||||||  |||| | |||||     
T  40968650 atacacacctcaatggcaagatcctcaagttttggagcattctgtataaagctaacgagcatattccaactgcaattctcagatatttcaatcgataaaa 40968551  T
Q  256 atgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    || |||||||||||||||||||||||||||||    ||| ||| ||||||||||| |||||||||||    
T  40968550 ataataaattgtgaaaagtgagaagatgtagggcatcaagattgtcctccatgctaagaaactgcat 40968484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 14267630 - 14267462
Alignment:
Q  155 ttcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagata--tcaacccata 252  Q
    ||||||| ||||| ||||| ||||| |||||||||||||||||| ||| | | ||||||||||| |||||||   || || | |||||  |||| | |||    
T  14267630 ttcatacgcaccttaatggaaagatccttaagttttggagcattatgtagaaagctaacaagcatattccaattgcaattcttagatatttcaatcgata 14267531  T
Q  253 aagatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgca 321  Q
    || ||  |||||||||||||||||||||||||  |||| |||  || ||||||||||| ||||||||||    
T  14267530 aaaatagtaaattgtgaaaagtgagaagatgtgtgttgtcaagtttgtcctccatgctcagaaactgca 14267462  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 536
Target Start/End: Complemental strand, 14267316 - 14267239
Alignment:
Q  459 atacaaactgttaaaatccacatgcttagaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactcata 536  Q
    |||| |||||||||||||   ||||||| |||||| ||||| ||||||||| ||||| ||||||||||||||||||||    
T  14267316 atacgaactgttaaaatctgaatgcttacaaatgcaaagagcagctcgatctagattagacaagtttgtaaactcata 14267239  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 536
Target Start/End: Complemental strand, 40968353 - 40968271
Alignment:
Q  454 tgtgaatacaaactgttaaaatccacatgcttagaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactcata 536  Q
    |||| ||||||||||||||||||   || ||||  |||| |||||| |||| |||| ||||||||||||||| ||| ||||||    
T  40968353 tgtgtatacaaactgttaaaatctgaatacttaataatgtgaagagaagcttgatcaagattggacaagtttataagctcata 40968271  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 132 - 322
Target Start/End: Original strand, 20439701 - 20439894
Alignment:
Q  132 ttgtgcaaatgtagttaaaagtat-tcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaac 230  Q
    |||||||||| |||||||||  |  |||||||||||  ||| ||||||| |||||||||||||||||||||| | | ||| || |||| ||||||||  |    
T  20439701 ttgtgcaaatatagttaaaaaaacatcatacacaccgtaattgcaagatccttaagttttggagcattctgtagaaagctgacgagcatattccaactcc 20439800  T
Q  231 atttttcagatat--caacccataaagatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    | || | ||||||  ||||||||||| || ||||||||||||||||||||||||||| |||| |||  || ||||||||||| |||||||||||    
T  20439801 aattcttagatatttcaacccataaaaataataaattgtgaaaagtgagaagatgtaagttgtcaagtttgtcctccatgctgagaaactgcat 20439894  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 20278480 - 20278630
Alignment:
Q  174 caagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagatat--caacccataaagatgataaattgtgaaa 271  Q
    ||||||||||||||||||||||||||||| | | ||| || |||| ||||||||  || || ||||||||  ||||||||||  || |||||||||||||    
T  20278480 caagatgcttaagttttggagcattctgtagaaagctgacgagcatattccaactgcaattctcagatatttcaacccataacaataataaattgtgaaa 20278579  T
Q  272 agtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    |||||||||||||| ||||  ||  || ||||||||||| |||||||||||    
T  20278580 agtgagaagatgtaagttgtaaaatttgtcctccatgctgagaaactgcat 20278630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 322
Target Start/End: Original strand, 20461833 - 20462001
Alignment:
Q  156 tcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagatat--caacccataa 253  Q
    |||||||||||| ||| ||||||| | |||||||||||||||||||  | | ||| || |||| ||||||||  ||| | ||||||||  ||||| ||||    
T  20461833 tcatacacaccttaattgcaagatacgtaagttttggagcattctgcagaaagctgacgagcatattccaactgcatctctcagatatttcaaccgataa 20461932  T
Q  254 agatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    | || ||||| ||||||||||||||||||||| |||| |||  || ||||||||||| |||||||||||    
T  20461933 aaataataaactgtgaaaagtgagaagatgtaagttgtcaagtttgtcctccatgctgagaaactgcat 20462001  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 322
Target Start/End: Original strand, 20450180 - 20450370
Alignment:
Q  132 ttgtgcaaatgtagttaaaagtattcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaaca 231  Q
    |||||||||| |||||||||  | ||||||||||| |||  |||||||||||||||||||| ||||| ||| | | ||| || |||| ||||||||  ||    
T  20450180 ttgtgcaaatatagttaaaa--aatcatacacaccccaactgcaagatgcttaagttttggtgcattgtgtagaaagctgacgagcatattccaactgca 20450277  T
Q  232 tttttcagatat--caacccataaagatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
     || ||| ||||  ||||| ||||| || ||||||||||||||||||||||||||| |||| |||  ||  |||||||||  |||||||||||    
T  20450278 attctcatatatttcaaccgataaaaataataaattgtgaaaagtgagaagatgtaagttgtcaagtttggcctccatgccgagaaactgcat 20450370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 322
Target Start/End: Original strand, 20443330 - 20443498
Alignment:
Q  156 tcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagatat--caacccataa 253  Q
    |||||||||||  ||  ||||||| |||||||||||||||||||||| | | ||| || |||| |||||||   || || ||||||||  |||||  |||    
T  20443330 tcatacacaccataactgcaagatccttaagttttggagcattctgtagaaagctgacgagcatattccaattgcaattctcagatatttcaaccgttaa 20443429  T
Q  254 agatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    | || ||||||||||||||||||||||||||| |||| |||  || ||||||||||| |||||||||||    
T  20443430 atataataaattgtgaaaagtgagaagatgtaagttgtcaagtttgtcctccatgctgagaaactgcat 20443498  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 322
Target Start/End: Original strand, 20476040 - 20476208
Alignment:
Q  156 tcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagata--tcaacccataa 253  Q
    |||||||||||| ||  ||||||| |||||||||||||||||||||  | | ||| || |||| ||||||||  ||  | |||||||  |||||  ||||    
T  20476040 tcatacacaccttaactgcaagatccttaagttttggagcattctgcagaaagctgacgagcatattccaactgcaactctcagatatttcaactgataa 20476139  T
Q  254 agatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    | || | ||| ||||||||||||||||||||| |||| |||  || ||||| ||||| |||||||||||    
T  20476140 atataacaaactgtgaaaagtgagaagatgtaagttgtcaagtttgtcctcgatgctgagaaactgcat 20476208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 322
Target Start/End: Original strand, 20431041 - 20431197
Alignment:
Q  168 caatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagatat--caacccataaagatgataaatt 265  Q
    |||| ||||||| |||||||||||||||||||||| | | | | |  |||| ||||||||  || || ||||||||  ||||   |||| || |||||||    
T  20431041 caattgcaagatccttaagttttggagcattctgtagaaagttgatgagcatattccaactgcaattctcagatatttcaactgttaaaaataataaatt 20431140  T
Q  266 gtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgcat 322  Q
    |||||||||||||||||| | | || |||  || ||||||||||| |||||||||||    
T  20431141 gtgaaaagtgagaagatgcaagctgtcaagtttgtcctccatgctgagaaactgcat 20431197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 536
Target Start/End: Original strand, 20278707 - 20278857
Alignment:
Q  387 ttatgaaacttacatgaataatttcataactgatagttaatgatttaacactaaaaagacctctcaatg-tgaatacaaactgttaaaatccacatgctt 485  Q
    |||||||||||||||||| ||||| | ||| || ||  | |||||| ||| || |||| ||| ||||   || ||||||| |||||||||||||| ||||    
T  20278707 ttatgaaacttacatgaaaaattttagaaccgagagccagtgatttgacattagaaagtcctttcaagactgtatacaaattgttaaaatccacacgctt 20278806  T
Q  486 agaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactcata 536  Q
    | |||||  || || ||||  ||| |||||||||||||||||||| |||||    
T  20278807 acaaatgaaaatagcagcttcatcaagattggacaagtttgtaaagtcata 20278857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 533
Target Start/End: Original strand, 37067519 - 37067589
Alignment:
Q  463 aaactgttaaaatccacatgcttagaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactc 533  Q
    |||||||||||||| |||| |||   ||||| ||||||||||||||| | ||||||||||||| |||||||    
T  37067519 aaactgttaaaatctacatactttataatgctaagagtagctcgatcaacattggacaagtttataaactc 37067589  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 20439978 - 20440120
Alignment:
Q  387 ttatgaaacttacatgaataatttcataactgatagttaatgatttaacactaaaaagacctctcaatg-tgaatacaaactgttaaaatccacatgctt 485  Q
    |||||||||||||||||| | ||| | |||||| ||  |||||||| ||| || |||| ||| ||||   || ||||||| |||||||||||||| ||||    
T  20439978 ttatgaaacttacatgaaaagttttagaactgagagccaatgatttgacattagaaagtcctttcaagaatgtatacaaattgttaaaatccacacgctt 20440077  T
Q  486 agaaatgcgaagagtagctcgatcgagattggacaagtttgta 528  Q
    | |||||  || || ||||   || ||||||||||||||||||    
T  20440078 acaaatgaaaatagaagcttcgtcaagattggacaagtttgta 20440120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 536
Target Start/End: Original strand, 20476358 - 20476435
Alignment:
Q  459 atacaaactgttaaaatccacatgcttagaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactcata 536  Q
    ||||||| |||||||||||  | ||||| |||||  |||  |||||||||| |||||||||||| ||| |||||||||    
T  20476358 atacaaattgttaaaatccggaagcttacaaatggaaagcctagctcgatcaagattggacaagcttgcaaactcata 20476435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 45484590 - 45484422
Alignment:
Q  155 ttcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaacaacatttttcagata--tcaacccata 252  Q
    ||||||| ||||| ||||| ||||| |||||||||||||||||| ||| | | ||||||||||| |||||||   || || | |||||  |||| | |||    
T  45484590 ttcatacgcaccttaatggaaagatccttaagttttggagcattatgtagaaagctaacaagcatattccaattgcaattcttagatatttcaatcgata 45484491  T
Q  253 aagatgataaattgtgaaaagtgagaagatgtaggttgccaatattatcctccatgcttagaaactgca 321  Q
    || ||  |||||||||||||||||||||||||  |||| |||  || ||||||||||| ||||||||||    
T  45484490 aaaattgtaaattgtgaaaagtgagaagatgtgtgttgtcaagtttgtcctccatgctcagaaactgca 45484422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 536
Target Start/End: Complemental strand, 45484271 - 45484194
Alignment:
Q  459 atacaaactgttaaaatccacatgcttagaaatgcgaagagtagctcgatcgagattggacaagtttgtaaactcata 536  Q
    |||| |||||||||||||   ||||||| |||||| ||||  ||||||||| ||||| ||||||||||||||||||||    
T  45484271 atacgaactgttaaaatctgaatgcttacaaatgcaaagaacagctcgatctagattagacaagtttgtaaactcata 45484194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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