View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-14 (Length: 350)
Name: NF5877-Insertion-14
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 49 - 336
Target Start/End: Original strand, 8139426 - 8139715
Alignment:
| Q |
49 |
tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatatt |
148 |
Q |
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| T |
8139426 |
tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatatt |
8139525 |
T |
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| Q |
149 |
cactcacaaccataaatgagttttaactctgattgttctaacag--gtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgg |
246 |
Q |
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| T |
8139526 |
cactcacaaccataaatgagttttaactctgattgttctaacagtggtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgg |
8139625 |
T |
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| Q |
247 |
gcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagt |
336 |
Q |
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| T |
8139626 |
gcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagt |
8139715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 300
Target Start/End: Complemental strand, 7499230 - 7499018
Alignment:
| Q |
94 |
tatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaaca-- |
191 |
Q |
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| T |
7499230 |
tatgctaaatgaacaggtaaccttcaaaatcaaaactttatggaattcacatat----tcacaaccataaacgagtttttattctgattgttctaacagt |
7499135 |
T |
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| Q |
192 |
ggtcgtcgctctc--------tgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaataatt |
283 |
Q |
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| T |
7499134 |
ggtcgtcgctctctgattgtgtgggaatatcatggcaagaacaagtgcagaagaaagttccgggtgggtaaagtggcatctaatgtcatggaaaaaaatt |
7499035 |
T |
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| Q |
284 |
ggtaaactaacgaggtc |
300 |
Q |
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| T |
7499034 |
ggtaaactaaagaggtc |
7499018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 7499519 - 7499460
Alignment:
| Q |
9 |
tcttgatcatttactaatgtttcttgtgtgtaatttgacatcttctctcatgcctttcga |
68 |
Q |
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| T |
7499519 |
tcttgatcatgtagtaatgtttcttgtgtgtaatttgacatcttctctcacgcctttcga |
7499460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 7502297 - 7502223
Alignment:
| Q |
73 |
actcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatat |
147 |
Q |
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| T |
7502297 |
actcttttctggtgagggccctatgtgcattgaagaggtaaacttcaaaatcagaactttattgaattcacatat |
7502223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 7502172 - 7502081
Alignment:
| Q |
220 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatgg-aaaataattggtaaactaacgaggtccttttctctt |
310 |
Q |
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| T |
7502172 |
aagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaaaaaattggtaaactaaagagttccctttttctt |
7502081 |
T |
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