View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877-Insertion-17 (Length: 213)
Name: NF5877-Insertion-17
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-17 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 28842655 - 28842859
Alignment:
| Q |
9 |
agcagcagccagaatcaaatggccatgacaaatgcaagcaatttcttttccagatttaacaaacttagtcaccagctccacaacactaggaatgtgagca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28842655 |
agcagcagccagaatcaaatggccatgacaaatgcaagcaatttcttttccagatttaacaaacttagtcaccagctccacaacactaggaatgtgagca |
28842754 |
T |
|
| Q |
109 |
agatactccggtgcccttcctcctggtaaccacagcccctcatagcttgtgtgatcaacttcatcaaaagttgcattgagtgtaaaattgtgaccaactg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28842755 |
agatactccggtgcccttcctcctggtaaccacagcccgtcatagcttgtgtgatcaacttcatcaaaagttgcattgagtgtaaaattgtgaccaactg |
28842854 |
T |
|
| Q |
209 |
tctca |
213 |
Q |
| |
|
||||| |
|
|
| T |
28842855 |
tctca |
28842859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 28828574 - 28828686
Alignment:
| Q |
101 |
tgtgagcaagatactccggtgcccttcctcctggtaaccacagcccctcatagcttgtgtgatcaacttcatcaaaagttgcattgagtgtaaaattgtg |
200 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||| ||| | || ||||| ||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
28828574 |
tgtgagcaagatactccgtcgtgcttccttatggtaaccacaacccattgtaacttgtatgatcaatttcatcaaaagttcgattgagtgtaaatttgtg |
28828673 |
T |
|
| Q |
201 |
accaactgtctca |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28828674 |
accaactgtctca |
28828686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 28831563 - 28831618
Alignment:
| Q |
135 |
taaccacagcccctcatagcttgtgtgatcaacttcatcaaaagttgcattgagtg |
190 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
28831563 |
taaccacaacccatcatagcttggttgatcaatttcatcaaaagttgcatcgagtg |
28831618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 28837906 - 28837947
Alignment:
| Q |
9 |
agcagcagccagaatcaaatggccatgacaaatgcaagcaat |
50 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28837906 |
agcagctgccagaatcaaatggccatgacagaagcaagcaat |
28837947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 13382527 - 13382445
Alignment:
| Q |
125 |
ttcctcctggtaaccacagcccctcatagcttgtgtgatcaacttcatcaaaagttgcattgagtgtaaaattgtgaccaact |
207 |
Q |
| |
|
|||||||| | |||||||| || ||||||||||| ||||||| |||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
13382527 |
ttcctcctagcaaccacaggccatcatagcttgtatgatcaaactcattaaaagttgcatcgagtgtcaaattgtgaccaact |
13382445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University