View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-2 (Length: 988)
Name: NF5877-Insertion-2
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 468
Target Start/End: Complemental strand, 41082616 - 41082151
Alignment:
| Q |
9 |
ataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082616 |
ataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagta |
41082517 |
T |
|
| Q |
109 |
cata--cttcataaaaaataatatttgtacgtacaaa----catcggttcccattgcatttgtgtgggtaaatatggaagaattctgttaaatataaaat |
202 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082516 |
catatacttcataaaaaataatatttgtacgtacatatatacatcggttcccattgcatttgtgtgggtaaatatggaagaattctgttaaatataaaat |
41082417 |
T |
|
| Q |
203 |
ttgatcacaccagaatatagatctgtataataatgtttttaagattaccgtgttttcttctgttccccctggctaccgtaccaattctctattaaatgta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082416 |
ttgatcacaccagaatatagatctgtataataatgtttttaagattaccgtgttttcttctgttccccctggctaccgtaccaattctctattaaatgta |
41082317 |
T |
|
| Q |
303 |
aataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaacaatttctttcttacag |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082316 |
aataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaacaatttctttcttacag |
41082217 |
T |
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| Q |
403 |
cttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagc |
468 |
Q |
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| T |
41082216 |
cttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagc |
41082151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 529 - 956
Target Start/End: Complemental strand, 41082090 - 41081668
Alignment:
| Q |
529 |
ccacctacatgtaaccctaactactgactttttaggccaactagagaattttcacgcgtaaactacggagactaatcatattgaataattgagactcttt |
628 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41082090 |
ccacctacatgtaaccctaactactgactttttaggccaactagagaattttcacgcgtaaactaaggagactaatcatattgaataattgagactcttt |
41081991 |
T |
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| Q |
629 |
caatcgacgtttttccatgcacaccagtcggagattgaacctccactatgttggtatgtcaggtatcagttagaagttccacattagtggtgttcaatct |
728 |
Q |
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| T |
41081990 |
caaccgacgtttttccatgcacaccagtcggagattgaacctccactatgttggtatgtcaggtatcagttagaagttccacattagtggtgttcaatct |
41081891 |
T |
|
| Q |
729 |
cacttatgtggttgctcttatctcaatgtgatgatctccggtattttaggacttcctcatgagtcatgaccttacacaccacatgtttcagataattaac |
828 |
Q |
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| T |
41081890 |
cacttatgtggttgctcttatctcaatgtgatgatctccggtattttaggacttcctcatgagtcatgaccttacacaccacatgtttcagataattaac |
41081791 |
T |
|
| Q |
829 |
tatc-aatgacttgtgacatagcatataattggtactaatcattgattttcttgttcatagcttggattactttaattattaattttaatgatgatgtaa |
927 |
Q |
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|||| ||||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41081790 |
tatcaaatgacttgtgtcatagcatataattggtacta---aatcattttcttgttcatagcttggattactttaattattaatttta---atgatgtaa |
41081697 |
T |
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| Q |
928 |
attgctaaagtacatgtttggaaatcctt |
956 |
Q |
| |
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| T |
41081696 |
attgctaaagtacatgtttggaaatcctt |
41081668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 735 - 776
Target Start/End: Original strand, 24076665 - 24076706
Alignment:
| Q |
735 |
tgtggttgctcttatctcaatgtgatgatctccggtatttta |
776 |
Q |
| |
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| T |
24076665 |
tgtggttgatcttaacacaatgtgatgatctccggtatttta |
24076706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 719 - 760
Target Start/End: Complemental strand, 38804040 - 38803999
Alignment:
| Q |
719 |
tgttcaatctcacttatgtggttgctcttatctcaatgtgat |
760 |
Q |
| |
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||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
38804040 |
tgttcaacctcacttgtgtggttgctcttaactcaatgtgat |
38803999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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