View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-20 (Length: 184)
Name: NF5877-Insertion-20
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-20 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 48790394 - 48790219
Alignment:
| Q |
9 |
ctggtattgtaatatctcttgcatctatttatgatctagagaagcacatatatcgtagagtattatacaaagggtacatttctgagttgtttgtgccata |
108 |
Q |
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| T |
48790394 |
ctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagagtattatacaaagggtacatttctgagttgtttgtgccata |
48790295 |
T |
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| Q |
109 |
ccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtg |
184 |
Q |
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| T |
48790294 |
ccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtg |
48790219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 15825925 - 15825751
Alignment:
| Q |
9 |
ctggtattgtaatatctcttgcatctatttatgatctagagaagcacatatatcgtagagtattatacaaagggtacatttctgagttgtttgtgccata |
108 |
Q |
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| T |
15825925 |
ctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagagtattatacaaagggtatatttctgagttgtttgtgccata |
15825826 |
T |
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| Q |
109 |
ccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgt |
183 |
Q |
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| T |
15825825 |
ccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatttggtcgatctactgt |
15825751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 48833835 - 48833966
Alignment:
| Q |
41 |
gatctagagaagcacatatatcgtagagtattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaaga |
140 |
Q |
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| T |
48833835 |
gatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaaga |
48833934 |
T |
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| Q |
141 |
catttttcgattctggtgagtttggatttggt |
172 |
Q |
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| T |
48833935 |
ctttctttgatgctggagagtttgaatttggt |
48833966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 48816695 - 48816530
Alignment:
| Q |
9 |
ctggtattgtaatatctcttgcatctatttatgatctagagaagcacatatatcgtagagtattatacaaagggtacatttctgagttgtttgtgccata |
108 |
Q |
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| T |
48816695 |
ctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgccgtgtactctacaaaggctacatttccgagctatttgtgcctta |
48816596 |
T |
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| Q |
109 |
ccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtct |
174 |
Q |
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| T |
48816595 |
tcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttggatttggtct |
48816530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 48808062 - 48807975
Alignment:
| Q |
83 |
tacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttg |
170 |
Q |
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| T |
48808062 |
tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttactttaagactttctttgattctggagagtttggatttg |
48807975 |
T |
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