View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877-Insertion-21 (Length: 173)
Name: NF5877-Insertion-21
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 2582173 - 2582337
Alignment:
| Q |
9 |
cttttcctgagccaacaatagaactaagactgttataacatgaatctttgtacaatgtaacatcacaaacagctttcatagaattagtcactgaattttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582173 |
cttttcctgagccaacaatagaactaagactgttataacatgaatctttgtacaatgtaacatcacaaacagctttcatagaattagtcactgaattttg |
2582272 |
T |
|
| Q |
109 |
agatgcattattgttgttatcatcatcattttttgagttaacaactcctaatacagctgcaatta |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582273 |
agatgcattattgttgttatcatcatcattttttgagttaacaactcctaatacagctgcaatta |
2582337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 16604306 - 16604271
Alignment:
| Q |
46 |
acatgaatctttgtacaatgtaacatcacaaacagc |
81 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
16604306 |
acatgaatccttgtacagtgtaacatcacaaacagc |
16604271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University