View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877-Insertion-5 (Length: 958)

Name: NF5877-Insertion-5
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877-Insertion-5
NF5877-Insertion-5
[»] chr1 (10 HSPs)
chr1 (137-570)||(38678672-38679098)
chr1 (586-698)||(49420877-49420989)
chr1 (586-705)||(42645955-42646072)
chr1 (450-559)||(17371644-17371753)
chr1 (414-556)||(5609538-5609680)
chr1 (489-556)||(48949645-48949712)
chr1 (453-556)||(24538686-24538789)
chr1 (453-552)||(51113518-51113617)
chr1 (617-663)||(15374654-15374700)
chr1 (569-643)||(23440614-23440688)
[»] chr3 (8 HSPs)
chr3 (589-957)||(54901073-54901446)
chr3 (590-705)||(33862107-33862221)
chr3 (453-556)||(34497257-34497360)
chr3 (453-556)||(55199710-55199813)
chr3 (410-556)||(647012-647158)
chr3 (617-663)||(42147505-42147551)
chr3 (617-663)||(51491754-51491800)
chr3 (491-556)||(31341648-31341713)
[»] chr4 (15 HSPs)
chr4 (586-957)||(33463691-33464067)
chr4 (586-705)||(51412608-51412729)
chr4 (590-687)||(48569424-48569521)
chr4 (406-559)||(53661213-53661369)
chr4 (414-556)||(51734818-51734960)
chr4 (497-556)||(23095413-23095472)
chr4 (414-559)||(21321726-21321871)
chr4 (489-556)||(32576969-32577036)
chr4 (489-556)||(37245773-37245840)
chr4 (453-556)||(44935967-44936070)
chr4 (736-775)||(48569574-48569613)
chr4 (803-857)||(48569592-48569647)
chr4 (489-556)||(49951512-49951579)
chr4 (489-556)||(51259450-51259517)
chr4 (571-624)||(47376851-47376904)
[»] chr5 (9 HSPs)
chr5 (586-957)||(6007293-6007688)
chr5 (453-556)||(22767158-22767261)
chr5 (453-556)||(4268298-4268401)
chr5 (453-555)||(23075032-23075134)
chr5 (409-469)||(12779019-12779079)
chr5 (453-556)||(27292633-27292735)
chr5 (473-556)||(27532811-27532894)
chr5 (576-687)||(33001936-33002047)
chr5 (489-556)||(41940658-41940725)
[»] chr2 (13 HSPs)
chr2 (572-687)||(30544727-30544842)
chr2 (572-687)||(44154915-44155030)
chr2 (586-687)||(8145558-8145659)
chr2 (572-642)||(30545413-30545483)
chr2 (490-559)||(10244492-10244561)
chr2 (572-613)||(44154276-44154317)
chr2 (453-556)||(9710154-9710257)
chr2 (736-775)||(8145712-8145751)
chr2 (489-556)||(34695825-34695892)
chr2 (489-556)||(34718237-34718304)
chr2 (803-857)||(44154789-44154844)
chr2 (736-775)||(44154823-44154862)
chr2 (453-559)||(88755-88861)
[»] chr6 (3 HSPs)
chr6 (586-705)||(1770699-1770818)
chr6 (569-621)||(33077569-33077621)
chr6 (453-556)||(34104350-34104453)
[»] chr8 (8 HSPs)
chr8 (586-705)||(35839736-35839854)
chr8 (586-705)||(33688237-33688353)
chr8 (410-556)||(11870463-11870609)
chr8 (414-556)||(40588576-40588718)
chr8 (414-556)||(477902-478044)
chr8 (570-644)||(43924994-43925068)
chr8 (414-570)||(13415208-13415364)
chr8 (570-608)||(43924488-43924526)
[»] chr7 (14 HSPs)
chr7 (586-705)||(9009-9129)
chr7 (586-698)||(47800101-47800213)
chr7 (414-556)||(9328448-9328590)
chr7 (414-556)||(16732132-16732274)
chr7 (414-556)||(17710266-17710408)
chr7 (414-556)||(24251638-24251777)
chr7 (489-556)||(29200876-29200943)
chr7 (453-556)||(44481286-44481389)
chr7 (616-663)||(46251434-46251481)
chr7 (570-620)||(41195366-41195416)
chr7 (519-553)||(43782988-43783022)
chr7 (409-470)||(6216578-6216639)
chr7 (570-643)||(7677415-7677488)
chr7 (574-687)||(7677742-7677855)
[»] scaffold0041 (1 HSPs)
scaffold0041 (569-687)||(27218-27336)
[»] scaffold0181 (1 HSPs)
scaffold0181 (618-669)||(15124-15175)
[»] scaffold0016 (1 HSPs)
scaffold0016 (617-663)||(67292-67338)
[»] scaffold0922 (1 HSPs)
scaffold0922 (453-554)||(149-250)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 137 - 570
Target Start/End: Original strand, 38678672 - 38679098
Alignment:
Q  137 ctacaacaaacaccaagaacccaacacaaaaggacagtgaatgaagaaatttaacac-attgtattttcagagctgaatttaactcatgacctctagtta 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38678672 ctacaacaaacaccaagaacccaacacaaaaggacaatgaatgaagaaatttaacactattgtattttcagagctgaatttaactcatgacctctagtta 38678771  T
Q  236 ggttggaagagatcttttactatgtcatccaaatgtttttggaagaagacaaacattaaaattgtattgatgatattgtaaaacgacctataaaatacaa 335  Q
     ||||||||    |||||||||| |||||||||| |||||||||||||| ||||||||| |||||||    |||||||||||||||||||||||||||||    
T  38678772 agttggaag----cttttactatctcatccaaatatttttggaagaagataaacattaagattgtat----gatattgtaaaacgacctataaaatacaa 38678863  T
Q  336 caannnnnnngttaaaatgtcatatggtgtgggatagatggagtaattactattggcttgataaactttcctgatattattaatcaacaaatgttcaata 435  Q
    |||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38678864 caatttgtttgttaaaatgtcatatggtctgggatagatggagtaattactattggcttgataaactttactgatattattaatcaacaaatgttcaata 38678963  T
Q  436 caaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaacttta 535  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |    
T  38678964 caaatcggagaaatctaaaaaatatggtgactagcataagaatatgtcgtcttagctaaggtatgagtaatcatattcatttttcgcctaataaacttca 38679063  T
Q  536 cctcgaagttggaatgtaaagctactttataaata 570  Q
    ||| ||||||||||||||||||||| |||||||||    
T  38679064 ccttgaagttggaatgtaaagctaccttataaata 38679098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 586 - 698
Target Start/End: Complemental strand, 49420989 - 49420877
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| || ||||||||||||| | |||||||||| ||    
T  49420989 tgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaggagcaccctcttatcatgttctctccacactgaattttt 49420890  T
Q  686 ttcacattatctt 698  Q
    |||||| ||||||    
T  49420889 ttcacactatctt 49420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 586 - 705
Target Start/End: Complemental strand, 42646072 - 42645955
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| | |||| |||| |||  ||||||||| || ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||  ||    
T  42646072 tgggaaagggaagtagttttccataatgggaaagttgatcttagccatttgattaaataaagagtacactcttatcatgttctctcaacactgaat--tt 42645975  T
Q  686 ttcacattatctttcccaac 705  Q
    |||||| |||||| ||||||    
T  42645974 ttcacactatcttccccaac 42645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 17371753 - 17371644
Alignment:
Q  450 ctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaa 549  Q
    |||||||||| ||||||||||  ||||||||| || |  ||||||||||||||  | ||| |||  || || |||||||||||| |||| ||||||||||    
T  17371753 ctcaaaaatacggtgactagctcaagaacatgccgccctagctaaggtatgagcgaccatattcgcttgtctcctaataaacttcaccttgaagttggaa 17371654  T
Q  550 tgtaaagcta 559  Q
    ||||||||||    
T  17371653 tgtaaagcta 17371644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 556
Target Start/End: Complemental strand, 5609680 - 5609538
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| ||   | |||||||  |||||||||  ||||||||| || |  |||||| ||||||| || |||||||    
T  5609680 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacagtgactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttc 5609581  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  5609580 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 5609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 48949645 - 48949712
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    ||||||| ||||||||| |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  48949645 agctaagctatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 48949712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 24538789 - 24538686
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||||||||||||||  |||||||||| |||  ||| || ||||||| ||||||||||  || |  |||||  ||||| ||||| ||||| ||||||    
T  24538789 aaaaatatggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgt 24538690  T
Q  553 aaag 556  Q
    ||||    
T  24538689 aaag 24538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 51113617 - 51113518
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| |||||||| |  ||||||| |||| |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  51113617 aaaaatacggtgactaacccaagaacaggtcgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgt 51113518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 15374700 - 15374654
Alignment:
Q  617 aagttgattttggccatttgattaaataaagagcacactattatcat 663  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  15374700 aagttgattttagccattggattaaataaagaacacacttttatcat 15374654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 23440614 - 23440688
Alignment:
Q  569 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaat 643  Q
    ||||||||||||||||||||||||||  | || ||||| |  ||| ||||||||||| || ||||| ||||||||    
T  23440614 tacggtgccatttaatttgggaaaggagagttctttccaactatggaaaagttgattatgtccattagattaaat 23440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 589 - 957
Target Start/End: Complemental strand, 54901446 - 54901073
Alignment:
Q  589 gaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttc 688  Q
    ||||||||| |||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901446 gaaagggaatttgttttccatgatgggaaacttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttc 54901347  T
Q  689 acattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaa 788  Q
    ||| ||||||||| ||| |                        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901346 acactatctttccaaacaattctctctcttccatctttctctcaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaa 54901247  T
Q  789 acaattgcaccattacaatctattcatctttaatttccagatcttggtc-ttgtttaaatttaacctctatttaaatttcaattcgatcctctcttgaat 887  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54901246 acaattgcaccatcacaatctattcatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatttcaatttgatcctctcttgaat 54901147  T
Q  888 aagaagaaattcatgct-aaagccatc-agaattt-ataatttaagaatttgttc-acatgaatgcagtagttt 957  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||    
T  54901146 aagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacattaatgcagtagttt 54901073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 590 - 705
Target Start/End: Complemental strand, 33862221 - 33862107
Alignment:
Q  590 aaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttca 689  Q
    |||||||| | |||||| |||||| |||||||||| || ||| |||||||||||||||| |||||| ||||||||||||| | ||||| |||| |||| |    
T  33862221 aaagggaagtagtttcctatgatggaaaagttgatcttagccctttgattaaataaagaacacactcttatcatgttctctctacacttaatt-ttttaa 33862123  T
Q  690 cattatctttcccaac 705  Q
    ||||||||| ||||||    
T  33862122 cattatcttccccaac 33862107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 556
Target Start/End: Original strand, 34497257 - 34497360
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||| | || |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  34497257 aaaaatacggtgactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 34497356  T
Q  553 aaag 556  Q
    ||||    
T  34497357 aaag 34497360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 55199813 - 55199710
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||||||| ||||||  ||||||| | || |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  55199813 aaaaatatggtcactagcgcaagaacaggccgccgtagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 55199714  T
Q  553 aaag 556  Q
    ||||    
T  55199713 aaag 55199710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 410 - 556
Target Start/End: Original strand, 647012 - 647158
Alignment:
Q  410 tattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcat 509  Q
    |||||||||||||| ||||||||||||||    || |||  ||||||||| ||||| |||   ||||||| | || |  | |||| ||||||| || |||    
T  647012 tattattaatcaaccaatgttcaatacaagaaagataaaattcaaaaatacggtgattagtccaagaacaggccgccctaactaaagtatgagcaaccat 647111  T
Q  510 gttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||| ||| || ||||| ||| || ||||||||||||||||||||||    
T  647112 gttcgtttgtctcctaacaaatttcacctcgaagttggaatgtaaag 647158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 42147551 - 42147505
Alignment:
Q  617 aagttgattttggccatttgattaaataaagagcacactattatcat 663  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  42147551 aagttgattttagccattggattaaataaagaacacacttttatcat 42147505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 51491754 - 51491800
Alignment:
Q  617 aagttgattttggccatttgattaaataaagagcacactattatcat 663  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  51491754 aagttgattttagccattggattaaataaagaacacacttttatcat 51491800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 31341648 - 31341713
Alignment:
Q  491 ctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||||||||| || |||||   ||| || |||||||||||| |||| |||||||||||||||||    
T  31341648 ctaaggtatgagcaaccatgtcagtttgtctcctaataaacttcaccttgaagttggaatgtaaag 31341713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-114; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 586 - 957
Target Start/End: Original strand, 33463691 - 33464067
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| |||||| ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33463691 tgggaaagggaatttgttttccatgatgggaaaattgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 33463790  T
Q  686 ttcacattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaat 785  Q
    |||||| ||||||||| ||| |                        |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33463791 ttcacactatctttccaaacaattctctctcttgcatctctctctcaccaacaacaaccagcaacttcacaattgattcatcttccatttgaacgaaaat 33463890  T
Q  786 aaaacaattgcaccattacaatctattcatctttaatttccagatcttggtc-ttgtttaaatttaacctctatttaaatttcaattcgatcctctcttg 884  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33463891 aaaacaattgcaccatcacaatctattcatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatttcaattcgatcctctcttg 33463990  T
Q  885 aataagaagaaattcatgct-aaagccatcagaa--tttataatttaagaatttgttc-acatgaatgcagtagttt 957  Q
    |||||||||||| ||||||| |||||||||| ||  || ||||||||||||||||||| |||| |||||||||||||    
T  33463991 aataagaagaaaatcatgctaaaagccatcaaaaatttaataatttaagaatttgttcaacattaatgcagtagttt 33464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 705
Target Start/End: Original strand, 51412608 - 51412729
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaa--aaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaatta 683  Q
    |||||||||||| |||||| |||||| |    |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||     
T  51412608 tgggaaagggaagttgttttccatgaggggggaaagttgattttagccatttgattaaataaggagcacactcttatcatgttctctcaacactgaattt 51412707  T
Q  684 ttttcacattatctttcccaac 705  Q
    |||||||| |||||| ||||||    
T  51412708 ttttcacactatcttccccaac 51412729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 590 - 687
Target Start/End: Original strand, 48569424 - 48569521
Alignment:
Q  590 aaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatttt 687  Q
    |||||||| |||||||||||||||  ||||||||||||  || ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  48569424 aaagggaagttgtttcccatgatgggaaagttgattttaaccgtttgattaaataaagagtacactgttatcatgttctcacaacactaaattatttt 48569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 53661369 - 53661213
Alignment:
Q  406 ctgatattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaa----tatggtgactagcataagaacatgtcgtctgagctaaggtatga 501  Q
    ||||||| |||||| ||||||| |||||||||| | ||  |||||| |||||    ||||||||||| |  ||||||||| || | | || ||| |||||    
T  53661369 ctgatatcattaataaacaaatattcaatacaagtaggctaaatctaaaaaaaaaatatggtgactaacccaagaacatgccgcccgtgcaaag-tatga 53661271  T
Q  502 gtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaagcta 559  Q
    ||| |||||||| ||| ||| |||||||  ||||||||||||||| ||||||||||||    
T  53661270 gtagtcatgttcgtttatcgtctaataatttttacctcgaagttgaaatgtaaagcta 53661213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 556
Target Start/End: Original strand, 51734818 - 51734960
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| |||||||||||||||  ||| ||   ||||| ||| ||| | ||||  ||||||| | || |  |||||| ||||||| || |||||||    
T  51734818 attaatcaaccaatgttcaatacaaaaaggataagaatcaaagatacggtaattagcccaagaacaggccgccctagctaaagtatgagcaaccatgttc 51734917  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    | || || ||||| |||||| ||||||||||||||||||||||    
T  51734918 acttgtcacctaacaaacttcacctcgaagttggaatgtaaag 51734960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 497 - 556
Target Start/End: Complemental strand, 23095472 - 23095413
Alignment:
Q  497 tatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||||||||||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  23095472 tatgagtaatcatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 23095413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 559
Target Start/End: Complemental strand, 21321871 - 21321726
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||| ||    
T  21321871 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgatc 21321772  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaagcta 559  Q
      || || | |||||||||| |||| ||||||||||||||||||||    
T  21321771 gcttgtctcttaataaacttcaccttgaagttggaatgtaaagcta 21321726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 32576969 - 32577036
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  32576969 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 32577036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 37245773 - 37245840
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  37245773 agctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaag 37245840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 556
Target Start/End: Original strand, 44935967 - 44936070
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| |||||||| |  ||||||||| ||||  ||||||  |||||| || |||||||  || ||  |||| |||||| ||||||||||||||||||    
T  44935967 aaaaatacggtgactaacccaagaacatgccgtcatagctaaactatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgt 44936066  T
Q  553 aaag 556  Q
    ||||    
T  44936067 aaag 44936070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 775
Target Start/End: Original strand, 48569574 - 48569613
Alignment:
Q  736 accacaaccagcaacttcacaattgattcatcttccattt 775  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  48569574 accacaaccagcaacttcacaatgtattcatcttccattt 48569613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 857
Target Start/End: Original strand, 48569592 - 48569647
Alignment:
Q  803 acaatctattcatctttaatttccagatcttggtct-tgtttaaatttaacctcta 857  Q
    ||||| ||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  48569592 acaatgtattcatcttccatttccagatcttggtctctgtttaattttaacctcta 48569647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 49951579 - 49951512
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  49951579 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 49951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 51259450 - 51259517
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  51259450 agctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 51259517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 624
Target Start/End: Original strand, 47376851 - 47376904
Alignment:
Q  571 cggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgat 624  Q
    ||||| ||||||||||||||||||| | ||||||||||| |||  |||||||||    
T  47376851 cggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgat 47376904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 2e-95; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 586 - 957
Target Start/End: Complemental strand, 6007688 - 6007293
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007688 tgggaaagggaatttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 6007589  T
Q  686 ttcacattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcat------------------- 766  Q
    |||||| ||||||||| ||| |                        |||||||||||||||||||||||||||||||||||                       
T  6007588 ttcacactatctttccaaacaattctctctcttccatctctctctcaccaaccacaaccagcaacttcacaattgattcatcttctcacaattgattcat 6007489  T
Q  767 cttccatttgaacgaaaataaaacaattgcaccattacaatctattcatctttaatttccagatcttggtc-ttgtttaaatttaacctctatttaaatt 865  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  6007488 cttccatttgaacgaagataaaacaattgcaccatcacaatctatccatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatt 6007389  T
Q  866 tcaattcgatcctctcttgaataagaagaaattcatgct-aaagccatc-agaattt-ataatttaagaatttgttc-acatgaatgcagtagttt 957  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||    
T  6007388 tcaattcgatcctctcttgaataagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacattaatgcagtagttt 6007293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 453 - 556
Target Start/End: Original strand, 22767158 - 22767261
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||||| || || |||||| ||||||| || ||||||| ||| || ||||| |||||| ||||||||||||||||||    
T  22767158 aaaaatacggtgactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgt 22767257  T
Q  553 aaag 556  Q
    ||||    
T  22767258 aaag 22767261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 4268401 - 4268298
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||||| || |  || ||| ||||||| || |||||||  || || |||||||||||| |||| |||||||||||||    
T  4268401 aaaaatacggtgactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgt 4268302  T
Q  553 aaag 556  Q
    ||||    
T  4268301 aaag 4268298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 453 - 555
Target Start/End: Complemental strand, 23075134 - 23075032
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||||||||||  ||||||  |||||| || |||||||  || || ||||| |||||| ||||  ||||||||||||    
T  23075134 aaaaatacggtgactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaacttcaccttaaagttggaatgt 23075035  T
Q  553 aaa 555  Q
    |||    
T  23075034 aaa 23075032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 409 - 469
Target Start/End: Complemental strand, 12779079 - 12779019
Alignment:
Q  409 atattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactag 469  Q
    |||||||||||||| || |||||| ||||| | |||||||||||| ||| |||||||||||    
T  12779079 atattattaatcaataattgttcattacaagtaggagaaatctcacaaacatggtgactag 12779019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 27292735 - 27292633
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  |||||||||||  || |||||| ||||||| || |||||||  || || ||| |||||||| || | |||||||||||||    
T  27292735 aaaaatacggtgactagcccaagaacatgtcccct-agctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcactttgaagttggaatgt 27292637  T
Q  553 aaag 556  Q
    ||||    
T  27292636 aaag 27292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 556
Target Start/End: Original strand, 27532811 - 27532894
Alignment:
Q  473 aagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||||||||  |  |||||| |||| ||||| |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  27532811 aagaacatgtcaccctagctaaagtataagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 27532894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 687
Target Start/End: Original strand, 33001936 - 33002047
Alignment:
Q  576 ccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaaca 675  Q
    |||||||||||||||||||  | || |||||||  ||| ||||||||||  || ||||| |||||||| | ||  ||| | ||||||| ||||| |||||    
T  33001936 ccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaaca 33002035  T
Q  676 ctgaattatttt 687  Q
    || |||||||||    
T  33002036 ctaaattatttt 33002047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 41940658 - 41940725
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| |||| || ||||||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  41940658 agctaaagtattagcaatcatgttctcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 41940725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 572 - 687
Target Start/End: Original strand, 30544727 - 30544842
Alignment:
Q  572 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcac 671  Q
    ||||||||||||||||||||| |||| |||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30544727 ggtgccatttaatttgggaaatggaagttgtttcccatgatgggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcac 30544826  T
Q  672 aacactgaattatttt 687  Q
    ||||||||||||||||    
T  30544827 aacactgaattatttt 30544842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 572 - 687
Target Start/End: Complemental strand, 44155030 - 44154915
Alignment:
Q  572 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcac 671  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  44155030 ggtgctatttaatttgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcac 44154931  T
Q  672 aacactgaattatttt 687  Q
    ||||| ||||||||||    
T  44154930 aacaccgaattatttt 44154915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 586 - 687
Target Start/End: Original strand, 8145558 - 8145659
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||| ||||||| |||||||| |||||   |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8145558 tggggaagggaagttgtttcctatgataggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcataacactgaattatt 8145657  T
Q  686 tt 687  Q
    ||    
T  8145658 tt 8145659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 642
Target Start/End: Complemental strand, 30545483 - 30545413
Alignment:
Q  572 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaa 642  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||  ||||  ||||| |||||||    
T  30545483 ggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaa 30545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 490 - 559
Target Start/End: Original strand, 10244492 - 10244561
Alignment:
Q  490 gctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaagcta 559  Q
    ||||| ||||||| ||||||||||| ||  ||| |||||||||| |||||||||||||||| ||||||||    
T  10244492 gctaaagtatgagcaatcatgttcacttgccgcttaataaacttcacctcgaagttggaatctaaagcta 10244561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 572 - 613
Target Start/End: Original strand, 44154276 - 44154317
Alignment:
Q  572 ggtgccatttaatttgggaaagggaacttgtttcccatgatg 613  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  44154276 ggtgccatttaatttgggaaagggaagttgtttcccatgatg 44154317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 9710257 - 9710154
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||| ||||||  |||||||   ||||| |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  9710257 aaaaatacggttactagcccaagaacagaccgtcttagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 9710158  T
Q  553 aaag 556  Q
    ||||    
T  9710157 aaag 9710154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 775
Target Start/End: Original strand, 8145712 - 8145751
Alignment:
Q  736 accacaaccagcaacttcacaattgattcatcttccattt 775  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  8145712 accacaaccagcaacttcacaatgtattcatcttccattt 8145751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 34695825 - 34695892
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  34695825 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 34695892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 34718237 - 34718304
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  34718237 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 34718304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 857
Target Start/End: Complemental strand, 44154844 - 44154789
Alignment:
Q  803 acaatctattcatctttaatttccagatcttggtct-tgtttaaatttaacctcta 857  Q
    ||||| ||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  44154844 acaatgtattcatcttccatttccagatcttggtctctgtttaattttaacctcta 44154789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 775
Target Start/End: Complemental strand, 44154862 - 44154823
Alignment:
Q  736 accacaaccagcaacttcacaattgattcatcttccattt 775  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  44154862 accacaaccagcaacttcacaatgtattcatcttccattt 44154823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 88861 - 88755
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||||||  || || || ||||||||| || | |||||||||||||    
T  88861 aaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgt 88762  T
Q  553 aaagcta 559  Q
    |||||||    
T  88761 aaagcta 88755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 586 - 705
Target Start/End: Complemental strand, 1770818 - 1770699
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| | ||| |||||||||  ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||| |||||| ||    
T  1770818 tgggaaagggaagtagttccccatgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 1770719  T
Q  686 ttcacattatctttcccaac 705  Q
    ||||||||||||| ||||||    
T  1770718 ttcacattatcttccccaac 1770699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 621
Target Start/End: Original strand, 33077569 - 33077621
Alignment:
Q  569 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagtt 621  Q
    ||||||||| ||||||||||||||||||| || |||||| ||||| |||||||    
T  33077569 tacggtgccgtttaatttgggaaagggaagttctttcccttgatggaaaagtt 33077621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 556
Target Start/End: Original strand, 34104350 - 34104453
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||||| || |  ||||||| |||||| || ||||||   || || ||||| |||||| ||||||||||| ||||||    
T  34104350 aaaaatacggtgactagcccaagaacatgccgccatagctaagctatgagcaaccatgtttgcttgtctcctaacaaacttcacctcgaagttcgaatgt 34104449  T
Q  553 aaag 556  Q
    ||||    
T  34104450 aaag 34104453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 586 - 705
Target Start/End: Original strand, 35839736 - 35839854
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| |||||||||||||||| ||||||  ||||| | ||  |||||| ||| ||||||||| ||||||||||||| |||||||||||| ||    
T  35839736 tgggaaagggaagttgtttcccatgatgagaaagttttttttgactatcagattaagtaaggagcacactcttatcatgttctctcaacactgaatt-tt 35839834  T
Q  686 ttcacattatctttcccaac 705  Q
    |||||| |||||||||||||    
T  35839835 ttcacactatctttcccaac 35839854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 586 - 705
Target Start/End: Original strand, 33688237 - 33688353
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| | ||||||||| |||  ||||||||| || ||||||||||||||||||||| ||||| |||| |||||||| |||||||||||  ||    
T  33688237 tgggaaagggaagtagtttcccat-atgggaaagttgatcttagccatttgattaaataaagagtacactcttattatgttctctcaacactgaat--tt 33688333  T
Q  686 ttcacattatctttcccaac 705  Q
    |||||| |||||| ||||||    
T  33688334 ttcacactatcttccccaac 33688353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 410 - 556
Target Start/End: Complemental strand, 11870609 - 11870463
Alignment:
Q  410 tattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcat 509  Q
    ||||||||| ||||||||||||||||||| | ||| ||   | ||||||||||||| ||||  ||||||| || | |  |||||| ||||||| || |||    
T  11870609 tattattaaccaacaaatgttcaatacaagtaggataagaataaaaaatatggtgattagcccaagaacaggttgccctagctaaagtatgagcaaccat 11870510  T
Q  510 gttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    ||||  || || ||||| |||||| ||||||||||| ||||||||||    
T  11870509 gttcgcttgtctcctaacaaacttcacctcgaagttagaatgtaaag 11870463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 414 - 556
Target Start/End: Original strand, 40588576 - 40588718
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  ||||||| | || |  |||||| ||||| | ||||||||||    
T  40588576 attaatcaactaatgttcaatacaagaaggataaaaataaaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttc 40588675  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  40588676 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 40588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 414 - 556
Target Start/End: Original strand, 477902 - 478044
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||| ||||  ||||||| | || |  |||||||||||||| || |||||||    
T  477902 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacggtgattagcccaagaacaggacgccctagctaaggtatgagcaaccatgttc 478001  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| |||| |||||||||||||||||    
T  478002 gcttgtctcctaacaaacttcaccttgaagttggaatgtaaag 478044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 570 - 644
Target Start/End: Complemental strand, 43925068 - 43924994
Alignment:
Q  570 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaata 644  Q
    |||||| | ||||||||||||||||||| ||||||||||  |||| |||||| |||||| || || |||||||||    
T  43925068 acggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaata 43924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 414 - 570
Target Start/End: Complemental strand, 13415364 - 13415208
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  13415364 attaatcaaccaatgttcaatacaagaaggataaaaataaaaaatacggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttc 13415265  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaagctactttataaata 570  Q
      || || ||||  |||||| |||| ||||||||||||||||| || || |||||||    
T  13415264 gcttgtctcctagcaaacttcaccttgaagttggaatgtaaagataattgataaata 13415208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 608
Target Start/End: Original strand, 43924488 - 43924526
Alignment:
Q  570 acggtgccatttaatttgggaaagggaacttgtttccca 608  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  43924488 acggtggcatttaatttgggaaagggaagttgtttccca 43924526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 586 - 705
Target Start/End: Complemental strand, 9129 - 9009
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaa-ttat 684  Q
    |||||||||||| | ||||  |||||||  ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||| |||| || |    
T  9129 tgggaaagggaagtagtttttcatgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 9030  T
Q  685 tttcacattatctttcccaac 705  Q
    |||||||||||||| ||||||    
T  9029 tttcacattatcttccccaac 9009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 586 - 698
Target Start/End: Complemental strand, 47800213 - 47800101
Alignment:
Q  586 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 685  Q
    |||||||||||| | ||| |||||||||  |||||||||  | | ||||||||||||||||||||||||| ||||||||||||| | ||| |||||| ||    
T  47800213 tgggaaagggaagtagttccccatgatgggaaagttgatcatagtcatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 47800114  T
Q  686 ttcacattatctt 698  Q
    |||||||||||||    
T  47800113 ttcacattatctt 47800101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 556
Target Start/End: Original strand, 9328448 - 9328590
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  ||||| | | ||||  |||||| ||||||| || |||||||    
T  9328448 attaatcaaccaatgttcaatacaagaaggataaaaattaaaaatacggtgactagcccaagaataggacgtcgtagctaaagtatgagcaaccatgttc 9328547  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| || |||||||||||||||||||    
T  9328548 gcttgtctcctaacaaacttcacatcgaagttggaatgtaaag 9328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 556
Target Start/End: Complemental strand, 16732274 - 16732132
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| |||||||||||||||  ||| ||   | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  16732274 attaatcaaccaatgttcaatacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttc 16732175  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  16732174 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 16732132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 556
Target Start/End: Complemental strand, 17710408 - 17710266
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| |||||||||||||||  ||| ||   | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  17710408 attaatcaaccaatgttcaatacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttc 17710309  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  17710308 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 17710266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 556
Target Start/End: Complemental strand, 24251777 - 24251638
Alignment:
Q  414 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 513  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||||||    
T  24251777 attaatcaaccaatgttcaatacaa---ggataagaattaaaaatacggtgactagctcaagaacaggccgccctagctaaagtatgagcaaccatgttc 24251681  T
Q  514 atttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  24251680 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 24251638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 29200876 - 29200943
Alignment:
Q  489 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 556  Q
    |||||| ||||||| || ||||||| ||| || ||||| |||||| ||||||||||||||||||||||    
T  29200876 agctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaag 29200943  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 453 - 556
Target Start/End: Complemental strand, 44481389 - 44481286
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||||||||||||||  ||||||| | || |  |||||| ||||||| || |||||||  || || ||||| |||||| |||||||||||| |||||    
T  44481389 aaaaatatggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttgaaatgt 44481290  T
Q  553 aaag 556  Q
    ||||    
T  44481289 aaag 44481286  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 46251434 - 46251481
Alignment:
Q  616 aaagttgattttggccatttgattaaataaagagcacactattatcat 663  Q
    |||||||||||| |||||| |||||| ||||||||||| |||||||||    
T  46251434 aaagttgattttagccattagattaattaaagagcacaatattatcat 46251481  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 41195416 - 41195366
Alignment:
Q  570 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagt 620  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||| ||||||    
T  41195416 acggtgccatttaatttgggaaagcaaacttctttcccatcatggaaaagt 41195366  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 519 - 553
Target Start/End: Original strand, 43782988 - 43783022
Alignment:
Q  519 tcgcctaataaactttacctcgaagttggaatgta 553  Q
    ||||| |||||||||||||||||||||||||||||    
T  43782988 tcgccgaataaactttacctcgaagttggaatgta 43783022  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 6216639 - 6216578
Alignment:
Q  409 atattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagc 470  Q
    ||||||||||| |  ||||||||||||||||  ||||||||||| |||| ||||||| ||||    
T  6216639 atattattaataaggaaatgttcaatacaaaaaggagaaatctcgaaaacatggtgattagc 6216578  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 7677415 - 7677488
Alignment:
Q  570 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaat 643  Q
    ||||| |||||||||||||||||||  | || |||||||  ||||||||||||||  || ||||| ||||||||    
T  7677415 acggtaccatttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccattagattaaat 7677488  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 687
Target Start/End: Complemental strand, 7677855 - 7677742
Alignment:
Q  574 tgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaa 673  Q
    |||||||||||||||||||||  | || |||||||  |||  |||||||||  ||  |||| |||||||| | || |||| | ||||||| ||||| |||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaa 7677756  T
Q  674 cactgaattatttt 687  Q
    |||| |||||||||    
T  7677755 cactaaattatttt 7677742  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 687
Target Start/End: Original strand, 27218 - 27336
Alignment:
Q  569 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttct 668  Q
    ||||||||||||||||||||||||||  | || |||||||| |||  |||||||||  || ||||| |||||||| | || |||| | |||||||  |||    
T  27218 tacggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactct 27317  T
Q  669 cacaacactgaattatttt 687  Q
    | ||||||| |||||||||    
T  27318 ctcaacactaaattatttt 27336  T

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Target: scaffold0181 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 15124 - 15175
Alignment:
Q  618 agttgattttggccatttgattaaataaagagcacactattatcatgttctc 669  Q
    |||||||||| ||||||||||||||||| ||||||| | |||||||| ||||    
T  15124 agttgattttagccatttgattaaataatgagcacaatcttatcatgctctc 15175  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 67292 - 67338
Alignment:
Q  617 aagttgattttggccatttgattaaataaagagcacactattatcat 663  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  67292 aagttgattttagccattggattaaataaagaacacacttttatcat 67338  T

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Target: scaffold0922 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 554
Target Start/End: Original strand, 149 - 250
Alignment:
Q  453 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 552  Q
    ||||||| ||||||||||  ||||||| ||||||  || ||| ||||||| || | |||||  || || ||||| |||||| || |||||||||||||||    
T  149 aaaaatacggtgactagcccaagaacaagtcgtcctagttaaagtatgagcaaccgtgttcgcttgtctcctaacaaacttcacatcgaagttggaatgt 248  T
Q  553 aa 554  Q
    ||    
T  249 aa 250  T

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