View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877-Insertion-7 (Length: 908)

Name: NF5877-Insertion-7
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877-Insertion-7
NF5877-Insertion-7
[»] chr5 (1 HSPs)
chr5 (9-880)||(4996427-4997301)


Alignment Details
Target: chr5 (Bit Score: 759; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 9 - 880
Target Start/End: Complemental strand, 4997301 - 4996427
Alignment:
Q  9 tcaagtactcttagttcaaagatttctgagttgaaatctggtaaggctccaacgaataagttgtcggagatgttcaagaaatgaaggtgggagcagggta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997301 tcaagtactcttagttcaaagatttctgagttgaaatctggtaaggctccaacgaataagttgtcggagatgttcaagaaatgaaggtgggagcagggta 4997202  T
Q  109 gcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccata 208  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997201 gcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccata 4997102  T
Q  209 aataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997101 aataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagc 4997002  T
Q  309 caatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaac 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997001 caatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttccatttgaac 4996902  T
Q  409 atagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaatgatcatg-ttttttgaagg 505  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||||    
T  4996901 atactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaatgatcgtgtttttttgaagg 4996802  T
Q  506 ggtgttaattttgtatttgtatagttgaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcgtgaataagtagaagctcctc 605  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996801 ggtgttaa-tttgtatttgtatagttgaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcgtgaataagtagaagctcctc 4996703  T
Q  606 ttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttgnnnnnnnnngggattatta 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
T  4996702 ttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttg--attttttgggattatta 4996605  T
Q  706 tggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttg-aaagttg-aaaa 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  4996604 tggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaa 4996505  T
Q  804 gtgaatacttgaaagcaataagaattttgcatgag-aaccataagtgaagaacaagacacagccaacggtagagtgta 880  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  4996504 gtgattacttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgta 4996427  T

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