View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877-Insertion-8 (Length: 882)
Name: NF5877-Insertion-8
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 6818454 - 6818208
Alignment:
| Q |
9 |
gtcttttccatatggttgacctcaagttccacctatatacttgattattcaatgactccaatgttgctgtccacgagtttggacttaggatacttacatt |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6818454 |
gtcttttccatatggttgacctgaagttctac----atacttgattattcaatgactccaatgttgctgtccacgagtttggactttggatacttacatt |
6818359 |
T |
|
| Q |
109 |
caatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattgtgattgtgaggtagatggtcacaatctatcccatcagactggaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6818358 |
aaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggt------attgggaggtagatggtcacaatctatcccatctgactggaa |
6818265 |
T |
|
| Q |
209 |
ttttttcttg-gcaagccatcaaactggacttaattataaggtgattgcattaagtt |
264 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
6818264 |
tttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagtt |
6818208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 6808206 - 6808012
Alignment:
| Q |
67 |
caatgttgctgtccacgagtttggacttaggata--cttacattcaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattg |
164 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6808206 |
caatgttgctttccacgagtttgggctttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggt---- |
6808111 |
T |
|
| Q |
165 |
tgattgtgaggtagatggtcacaatctatcccatcagactggaattttttcttg-gcaagccatcaaactggacttaattataaggtgattgcattaagt |
263 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
6808110 |
--attgggaggtagatggtcacaatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagt |
6808013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University