View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877-Insertion-9 (Length: 833)
Name: NF5877-Insertion-9
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 8 - 818
Target Start/End: Complemental strand, 53097796 - 53096991
Alignment:
| Q |
8 |
agaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcctaccaattgtggtactaa |
107 |
Q |
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| T |
53097796 |
agaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcctaccagttgtggtactaa |
53097697 |
T |
|
| Q |
108 |
tgctgacaatgaagtataccgtgaatcgttaatgaagaattcggtttctcaggaacaagaggagagtactaatgctacttttcaaggttatttattcttt |
207 |
Q |
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| T |
53097696 |
tgctgacaatgaagtataccgtgaatcgttactgaagaattcggtttctca------agaggagagtactaatgctacttttcaaggttatttattctct |
53097603 |
T |
|
| Q |
208 |
--atcacattgctttcattagttatttaattaataataataattactgttttatgaatttctgattaannnnnnnnnatttgtcatgtgttttagcctca |
305 |
Q |
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| T |
53097602 |
ctatcacattgctttcattagttatttaattaataataataattactgttttatgaatttctgattaatttttttt-atttgtcatgtgttttagcctca |
53097504 |
T |
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| Q |
306 |
gaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagttcaagtgaaaccattgatgttgatgacaatgatttaa |
405 |
Q |
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| T |
53097503 |
gaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagttcaagtgaaaccattgatgttgatgacaatgatttaa |
53097404 |
T |
|
| Q |
406 |
ctgggagtgcagataatttggtggcaactcaaagcactgctccaaaattaaatctgcagggtgtgcctatgatggttaagagtgaaaatggttgcaaagt |
505 |
Q |
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| T |
53097403 |
ctgggagtgcagataatttggtggcaactcaaatcactgctccaaaagtaaatctgcagggtgtgcctatgatggttaagagtgaaaatggttgcaaagt |
53097304 |
T |
|
| Q |
506 |
tgaagtgcatgactctgaattgtctattgaaatggggtgtgtagtttttaagttgcattgtgtgaaatctctattttcaaattctttttcatatttattt |
605 |
Q |
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| T |
53097303 |
tgaagtgcatgactctgaattgtctattgaaatggggtgtgtagtttttaagttgcattgtgtgaaatctctattttcaaattctttttcatatttattt |
53097204 |
T |
|
| Q |
606 |
attgtgttttgtcatcatattgcagattaaatgtgtccacagaatcacaattttcacatattgggggaaaagtagaagtggagtatgagacggtagttgt |
705 |
Q |
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| T |
53097203 |
attgtgttttgtcatcatattgcagattaaatgtgtccacagaatcgcaattttcacatattgggggaaaagtagaagtggagtatgagacggtagttgt |
53097104 |
T |
|
| Q |
706 |
ttagaactcttgtttttacaagctagcgctagtatgactggtatcttatttatcaacttgcgtttcaggtcggagtaattggttgtaagcaagaacaaca |
805 |
Q |
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| T |
53097103 |
ttagaactcttgtttttacaagctagcgctagtatgactggtgtcttatttatcaacttgcgtttcaggtcggaggcattggttgtaagcaagaacaaca |
53097004 |
T |
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| Q |
806 |
tataatcaagtac |
818 |
Q |
| |
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||||||||||||| |
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| T |
53097003 |
tataatcaagtac |
53096991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 8021246 - 8021307
Alignment:
| Q |
29 |
ccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcct |
90 |
Q |
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|||| |||||||||||| ||||||| || |||||||| ||||| ||||||| |||||||||| |
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| T |
8021246 |
ccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcct |
8021307 |
T |
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