View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877_high_18 (Length: 250)

Name: NF5877_high_18
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877_high_18
NF5877_high_18
[»] chr7 (3 HSPs)
chr7 (154-242)||(28382127-28382215)
chr7 (1-83)||(28382286-28382368)
chr7 (1-83)||(28386754-28386836)
[»] chr4 (1 HSPs)
chr4 (46-83)||(28657858-28657895)
[»] chr2 (1 HSPs)
chr2 (46-85)||(2037642-2037681)
[»] chr6 (2 HSPs)
chr6 (55-85)||(21508132-21508162)
chr6 (55-83)||(34519149-34519177)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 28382215 - 28382127
Alignment:
Q  154 gggatcttacactacacttatcgcttcaaattttctgtcattaatccttctgtgtgtcatgtatttgttgaatcaccatcacctatgct 242  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  28382215 gggatcttacactacacctatcgcttcaaattttctgtcattaatccttctgtgtgtcatgtatttgttgaagcaccatcacttatgct 28382127  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28382368 - 28382286
Alignment:
Q  1 atttgaccacatagtaaataaaatcaatttgaaaatannnnnnnattaaaagaaaaataatatcatcactcaataaatcatac 83  Q
    |||||| ||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||    
T  28382368 atttgatcacatagtaaataaaatcaatttgaaaatatttttttattaaaagagaaataatatcatcactcaataaatcatac 28382286  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28386836 - 28386754
Alignment:
Q  1 atttgaccacatagtaaataaaatcaatttgaaaatannnnnnnattaaaagaaaaataatatcatcactcaataaatcatac 83  Q
    |||||| ||||||||||||||||||||||||||||||       ||||| ||| |||||||||||||||||||||||||||||    
T  28386836 atttgatcacatagtaaataaaatcaatttgaaaatatttttttattaagagagaaataatatcatcactcaataaatcatac 28386754  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 28657858 - 28657895
Alignment:
Q  46 ttaaaagaaaaataatatcatcactcaataaatcatac 83  Q
    |||||||| |||||||||||||||||||||||||||||    
T  28657858 ttaaaagagaaataatatcatcactcaataaatcatac 28657895  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 2037681 - 2037642
Alignment:
Q  46 ttaaaagaaaaataatatcatcactcaataaatcatactg 85  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  2037681 ttaagagagaaataatatcatcactcaataaatcatactg 2037642  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 85
Target Start/End: Complemental strand, 21508162 - 21508132
Alignment:
Q  55 aaataatatcatcactcaataaatcatactg 85  Q
    |||||||||||||||||||||||||||||||    
T  21508162 aaataatatcatcactcaataaatcatactg 21508132  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 34519149 - 34519177
Alignment:
Q  55 aaataatatcatcactcaataaatcatac 83  Q
    |||||||||||||||||||||||||||||    
T  34519149 aaataatatcatcactcaataaatcatac 34519177  T

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