View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_high_20 (Length: 241)
Name: NF5877_high_20
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6818241 - 6818454
Alignment:
| Q |
1 |
tttgatggcttgc-caagaaaaaattccagtctgatgggatagattgtgaccatctacctcacaatcacaataccttagccattaaatcattacgtgccc |
99 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
6818241 |
tttgatggcttgctcaagcaaaaattccagtcagatgggatagattgtgaccatctacctcccaat------accttagccattaaatcattacgtgccc |
6818334 |
T |
|
| Q |
100 |
aagtttgtttcatcggttaaattgaatgtaagtatcctaagtccaaactcgtggacagcaacattggagtcattgaataatcaagtatataggtggaact |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6818335 |
aagtttgtttcatcggttaaatttaatgtaagtatccaaagtccaaactcgtggacagcaacattggagtcattgaataatcaagtat----gtagaact |
6818430 |
T |
|
| Q |
200 |
tgaggtcaaccatatggaaaagac |
223 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
6818431 |
tcaggtcaaccatatggaaaagac |
6818454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6808045 - 6808206
Alignment:
| Q |
1 |
tttgatggcttgc-caagaaaaaattccagtctgatgggatagattgtgaccatctacctcacaatcacaataccttagccattaaatcattacgtgccc |
99 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
6808045 |
tttgatggcttgctcaagcaaaaattccagtcagatgggatagattgtgaccatctacctcccaat------accttagccattaaatcattacgtgccc |
6808138 |
T |
|
| Q |
100 |
aagtttgtttcatcggttaaattgaatgtaag--tatcctaagtccaaactcgtggacagcaacattg |
165 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
6808139 |
aagtttgtttcatcggttaaattcaatgtaagtctatccaaagcccaaactcgtggaaagcaacattg |
6808206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University