View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_high_23 (Length: 238)
Name: NF5877_high_23
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7286289 - 7286068
Alignment:
| Q |
1 |
attgttgagcatcatggttagtaggagaatgcccaatatagaatatgtttcagatttgaatcaagtcaataagtttgttgacaatataaaaaattaatta |
100 |
Q |
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| T |
7286289 |
attgttgagtatcatggttagtaggagaatgcccaatatagaatatgtttcagatttgaatcaagtcaataagtttgttaataatataaaaaattaatta |
7286190 |
T |
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| Q |
101 |
tcatattacgtttataacactgttcatttagactattaaatcactaagattgttattagcaaataagttatacctcttaacatattaaggtagaccaata |
200 |
Q |
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| T |
7286189 |
tcatattacgtttataacaccgttcatttagactattaaatcactaagattgttattagcaaataagttatacctcttaacatattaaggtagaccaata |
7286090 |
T |
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| Q |
201 |
tacccttcgttttgcaaccaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
7286089 |
tacccttcgttttgcaaccaat |
7286068 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 16336229 - 16336299
Alignment:
| Q |
119 |
actgttcatttagactattaaatcactaagattgttattagcaaataagttatacctcttaacatattaag |
189 |
Q |
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| T |
16336229 |
actgttcaattaaaatattaaatcattatgattgttataagcaaataagttatacctcttaaaagattaag |
16336299 |
T |
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