View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_high_9 (Length: 376)
Name: NF5877_high_9
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 44728159 - 44727976
Alignment:
| Q |
64 |
gatcttaaccatccattgtgtttaccatatgcaggcaaagtcaaatgaaaggaatctaaatggtccttaattacaacggacactctccaatgagattatc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44728159 |
gatcttaaccatccattgtgtttaccatatgcaggcaaagtcaaatgaaaggaatctaaatggtccttaattacaacggacactctccaatgagattatc |
44728060 |
T |
|
| Q |
164 |
acggaagagaatcctaatccgaaaatggcagggagaccatccgacccaggtactgcagggctcttcatttgggatacagcaatg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44728059 |
acggaagagaatcctaatccgaaaatggcagggagaccatccgacccaggtactgcctggctcttcatttgggatacagcaatg |
44727976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 44727746 - 44727625
Alignment:
| Q |
246 |
tgaagagttatatatatagattcataaagatggttttctttttattgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
345 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44727746 |
tgaagagttatatatataaattcataaagatggttttctttt-attgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
44727648 |
T |
|
| Q |
346 |
gttttggatatctagcctatgct |
368 |
Q |
| |
|
|||||||||||| || ||||||| |
|
|
| T |
44727647 |
gttttggatatccaggctatgct |
44727625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44728197 - 44728266
Alignment:
| Q |
1 |
cggtttttggacatgatagtggtttcataaattgtgtctttaatattgataatgctaacaggtgatctta |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
44728197 |
cggtttttggacatgatagtggtttcataaattgtgtctttaatattgataatgctaacgggggatctta |
44728266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University