View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_low_11 (Length: 330)
Name: NF5877_low_11
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 6135422 - 6135131
Alignment:
| Q |
17 |
gagactgtccacactttagctaaggcagctacatcccttactaatttccgctcattaactgatgtaccaaattgtattactactcttattataaataaaa |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6135422 |
gagactgcccacactttagctaaggcagctacatctcttactaatttccgctcattaactgatgtaccaaattgtattactactcctattataaataaaa |
6135323 |
T |
|
| Q |
117 |
tgaactaagtcttgttgcatt-----nnnnnnnnctttataaaattattatattccattggagccttaaaagaacttcttggtttggaactcccaaagtt |
211 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6135322 |
tgaactaagtc-tgttgcattaaaaaaaaaaaaactttataaaattattatattccattggagccttaaaagaacttcttggtttggaactcccaaagtt |
6135224 |
T |
|
| Q |
212 |
ttgggcagcttacttttaagatgcttacttgttctatgttccagttggtcaaaacatttcttgggcaaaaagaatttggagtataaaaataagtcctagc |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6135223 |
ttgggc---------------tgcttacttgttctatgttccagttggtcaaaacatttcttgggcaaaaagaatttggagtataaaaataagtcctagc |
6135139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University