View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_12 (Length: 310)
Name: NF5877_low_12
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 7286827 - 7286689
Alignment:
| Q |
12 |
atgaatatattgaaacttcaaaaatatccacaaatatctcgaaaggtaatcaagaatgaagaagtacaaaattgaattataaaaatttaagaaaatgtgc |
111 |
Q |
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| T |
7286827 |
atgaatatattgaaacttcaaaaatatccacaaatatctcgaaaggtaatcaagaacgaagaagtagaaaattgaattataaaaatttaagaaaatgtgc |
7286728 |
T |
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| Q |
112 |
ataaggtctgcaaatagagaccgaaattgaggtgttcaa |
150 |
Q |
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| T |
7286727 |
ataaggtctgcaaatagagaccgaaattgaggtgttcaa |
7286689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 188 - 310
Target Start/End: Complemental strand, 7286488 - 7286370
Alignment:
| Q |
188 |
tctttccagtttttatatttactcttggttaattttagcttgccctcctttgtatatagagcccgaacttcctggtaaaataaataaattcatttttatg |
287 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
7286488 |
tctttccagtttttatattgactcttggttaattttagcttgccctcctttgtatatagtacccggacttcctggtaaaat----aaattcatttttatg |
7286393 |
T |
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| Q |
288 |
tattagtgtatatgttactcttt |
310 |
Q |
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| T |
7286392 |
tattagtgtatatgttactcttt |
7286370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 8357372 - 8357411
Alignment:
| Q |
12 |
atgaatatattgaaacttcaaaaatatccacaaatatctc |
51 |
Q |
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| T |
8357372 |
atgaatatattgaaactgcaaaaatatccacaaatctctc |
8357411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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