View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_low_16 (Length: 254)
Name: NF5877_low_16
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 38237779 - 38238018
Alignment:
| Q |
9 |
gaataatataaaaaacacatcaaccccttaattaatttcgcacgnnnnnnncaaaatctttctttaaattctctcatggccatgtcagttgcttcttcta |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38237779 |
gaataaaataaaaaacacatcaaccccttaattaatttcgcacgaaaaaaacaaaatctttctttaaattctctcatggccatgtcagttgcttcttcta |
38237878 |
T |
|
| Q |
109 |
tttgcaccctccttcccttctctaaaccccacaactccgtacctctcttctcttcccaaaccaaaaaacgatgtcgtatcatcatcagctccgtcacaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38237879 |
tttgcaccctccttcccttctctaaaccccacaactccgtacctctcttctcttcccaaaccaaaaaacgatgtcgtatcatcatcagctccgtcacaga |
38237978 |
T |
|
| Q |
209 |
ggatcgtcaagcagcttcagttgtgtcaaaagacaagaaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38237979 |
ggatcgtcaagcagcttcagttgtgtcaaaagacaagaaa |
38238018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University