View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877_low_17 (Length: 250)

Name: NF5877_low_17
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877_low_17
NF5877_low_17
[»] chr1 (4 HSPs)
chr1 (18-132)||(40982074-40982188)
chr1 (167-236)||(40968581-40968650)
chr1 (213-250)||(40982018-40982055)
chr1 (164-235)||(14267559-14267630)
[»] chr7 (1 HSPs)
chr7 (164-235)||(45484519-45484590)
[»] chr4 (5 HSPs)
chr4 (141-236)||(20439701-20439797)
chr4 (141-236)||(20450180-20450273)
chr4 (183-236)||(20278480-20278533)
chr4 (165-210)||(20461833-20461878)
chr4 (165-210)||(20476040-20476085)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 40982188 - 40982074
Alignment:
Q  18 catgcaaaattaattannnnnnnatcggttttatttgcaaattccaagtatctttcgctcaatctttgcatgtcttatgatagattttgagcttattaat 117  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  40982188 catgcaaaattaattatttttttatcggttttatttgcaaattccaagtatctttcgctcaatctttgcacgtcttgtgatagattttgagcttattaat 40982089  T
Q  118 atattttacaatttt 132  Q
    |||||||||||||||    
T  40982088 atattttacaatttt 40982074  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 40968650 - 40968581
Alignment:
Q  167 atacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaac 236  Q
    |||||||||||||||||||||| || |||||||||||||||||||   | |||||| |||| ||||||||    
T  40968650 atacacacctcaatggcaagatcctcaagttttggagcattctgtataaagctaacgagcatattccaac 40968581  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 40982055 - 40982018
Alignment:
Q  213 gtatgctaacaagcacattccaacaacatttttcagat 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40982055 gtatgctaacaagcacattccaacaacatttttcagat 40982018  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 14267630 - 14267559
Alignment:
Q  164 ttcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaa 235  Q
    ||||||| ||||| ||||| ||||| |||||||||||||||||| ||| | | ||||||||||| |||||||    
T  14267630 ttcatacgcaccttaatggaaagatccttaagttttggagcattatgtagaaagctaacaagcatattccaa 14267559  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 45484590 - 45484519
Alignment:
Q  164 ttcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaa 235  Q
    ||||||| ||||| ||||| ||||| |||||||||||||||||| ||| | | ||||||||||| |||||||    
T  45484590 ttcatacgcaccttaatggaaagatccttaagttttggagcattatgtagaaagctaacaagcatattccaa 45484519  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 20439701 - 20439797
Alignment:
Q  141 ttgtgcaaatgtagttaaaagtat-tcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaac 236  Q
    |||||||||| |||||||||  |  |||||||||||  ||| ||||||| |||||||||||||||||||||| | | ||| || |||| ||||||||    
T  20439701 ttgtgcaaatatagttaaaaaaacatcatacacaccgtaattgcaagatccttaagttttggagcattctgtagaaagctgacgagcatattccaac 20439797  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 20450180 - 20450273
Alignment:
Q  141 ttgtgcaaatgtagttaaaagtattcatacacacctcaatggcaagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaac 236  Q
    |||||||||| |||||||||  | ||||||||||| |||  |||||||||||||||||||| ||||| ||| | | ||| || |||| ||||||||    
T  20450180 ttgtgcaaatatagttaaaa--aatcatacacaccccaactgcaagatgcttaagttttggtgcattgtgtagaaagctgacgagcatattccaac 20450273  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 20278480 - 20278533
Alignment:
Q  183 caagatgcttaagttttggagcattctgtcgtatgctaacaagcacattccaac 236  Q
    ||||||||||||||||||||||||||||| | | ||| || |||| ||||||||    
T  20278480 caagatgcttaagttttggagcattctgtagaaagctgacgagcatattccaac 20278533  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 20461833 - 20461878
Alignment:
Q  165 tcatacacacctcaatggcaagatgcttaagttttggagcattctg 210  Q
    |||||||||||| ||| ||||||| | |||||||||||||||||||    
T  20461833 tcatacacaccttaattgcaagatacgtaagttttggagcattctg 20461878  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 20476040 - 20476085
Alignment:
Q  165 tcatacacacctcaatggcaagatgcttaagttttggagcattctg 210  Q
    |||||||||||| ||  ||||||| |||||||||||||||||||||    
T  20476040 tcatacacaccttaactgcaagatccttaagttttggagcattctg 20476085  T

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