View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_19 (Length: 246)
Name: NF5877_low_19
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 258590 - 258386
Alignment:
| Q |
17 |
aaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
258590 |
aaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaat |
258501 |
T |
|
| Q |
117 |
cagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
258500 |
cagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaa |
258406 |
T |
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| Q |
217 |
acaataagggaggctctgtg |
236 |
Q |
| |
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|||||||||||||||||||| |
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| T |
258405 |
acaataagggaggctctgtg |
258386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 657331 - 657535
Alignment:
| Q |
17 |
aaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
657331 |
aaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaat |
657420 |
T |
|
| Q |
117 |
cagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
657421 |
cagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaa |
657515 |
T |
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| Q |
217 |
acaataagggaggctctgtg |
236 |
Q |
| |
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|||||||||||||||||||| |
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| T |
657516 |
acaataagggaggctctgtg |
657535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 843066 - 843270
Alignment:
| Q |
17 |
aaatcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
843066 |
aaatcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaat |
843155 |
T |
|
| Q |
117 |
cagagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
843156 |
cagagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaa |
843250 |
T |
|
| Q |
217 |
acaataagggaggctctgtg |
236 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
843251 |
acaataagggaggctctgtg |
843270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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