View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_2 (Length: 542)
Name: NF5877_low_2
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_2 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 525
Target Start/End: Original strand, 2675472 - 2675993
Alignment:
| Q |
10 |
gcacagaaacgaggaatgcagaggataatgccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagtatggctgctcatgcttgatga |
109 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
2675472 |
gcacagaaacgaggaatgcagaagataataccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagtatgacttctcatgcttgatga |
2675571 |
T |
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| Q |
110 |
actatttatgtctcatacttctgtaaaaatttgtctattactgccaaatctttgcagattttggatactcaatttccttagatactataagtctatgaca |
209 |
Q |
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| T |
2675572 |
actatttatgtctcatactgctgtaaaaatttgtctat--ctgccaaatctttgcagattttggatactcaatttccttagatactataagtctatgaca |
2675669 |
T |
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| Q |
210 |
gttatgtaatgaggtacaaagataaagaaatttttgtaaacagtt---------atcttatttagtcacattagttcttaataaaattaaaattatttca |
300 |
Q |
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| T |
2675670 |
gttatgtaatgaggtacaaagataaagaaatttttgtaaacagttaaatggaccatcttatttagtcacattagttctt-ataaaatgaaaattatttca |
2675768 |
T |
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| Q |
301 |
aaagttcctgaatgtaatctctatgtaatataatcttgcataaattatgtaccaactagatgcttcaaaaatataacttcatttgatttctgtaaataaa |
400 |
Q |
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| T |
2675769 |
aaagttcctgaatgtaatctctatgtaatataatcttgcataaattatgtactaactagatgcttcaaaaatataacttcatttgatttctgtaaattaa |
2675868 |
T |
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| Q |
401 |
taatagttagctccttgattaattggttgtatcaactgtgcctaagatctgtggctcaaaaacttatggatagtattacattcaataggaaatatctatt |
500 |
Q |
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| T |
2675869 |
taatagttagctccttgattaattggttgtttcaactgtgcctaagatctgtgtctcaaaaacttatggatcgtattacggtcaatagtaaatatctatt |
2675968 |
T |
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| Q |
501 |
gtaagtgcttttgtagctggaggtt |
525 |
Q |
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| T |
2675969 |
ataagtgcttttgtaacaggaggtt |
2675993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 142880 - 143011
Alignment:
| Q |
10 |
gcacagaaacgaggaatgcagaggataatgccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagta-tggctgctcatgcttgatg |
108 |
Q |
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| T |
142880 |
gcacagaaacaagaaatgcagaagagaatgtcacaaatagccagcaaatcccagtggtgattgagcttgttgatagtgtactggctgctcatgcttcatg |
142979 |
T |
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| Q |
109 |
aactatttatgtctcatacttctgtaaaaatt |
140 |
Q |
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| T |
142980 |
aacatttcatgtttcatactactgtaaaaatt |
143011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 150826 - 150978
Alignment:
| Q |
24 |
aatgcagaggataatgccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagta-tggctgctcatgcttgatgaactat---ttatg |
119 |
Q |
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| T |
150826 |
aatgcagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaataatg |
150925 |
T |
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| Q |
120 |
tctcatacttctgtaaaaatttgtctattactgccaaatctttgcagattttg |
172 |
Q |
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| T |
150926 |
tttcaaactactgtaaaaattaatctattactgccaaatattttaagattttg |
150978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 24988872 - 24988956
Alignment:
| Q |
28 |
cagaggataatgccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagta-tggctgctcatgcttgatgaac |
111 |
Q |
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| T |
24988872 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgctcatgcttcatgaac |
24988956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 24912191 - 24912284
Alignment:
| Q |
28 |
cagaggataatgccacaaatagctagcaaaacctagttgtggttgagcttgttgatatagta-tggctgctcatgcttgatgaactatttatgt |
120 |
Q |
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| T |
24912191 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgtcgataatgtactggctgctcatgcttcatgaacaattaatgt |
24912284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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