View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_22 (Length: 241)
Name: NF5877_low_22
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 28382781 - 28382997
Alignment:
| Q |
9 |
tccatgatttagttccactattttaggaaggaagttggtagggggttgcactctatgaataaatgtcagtttcctttttccctctcagtcattcattact |
108 |
Q |
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| T |
28382781 |
tccatgatttagttccactattttaggaaggaagttggtagggggttgcactctatgaataactgtcggtttcctttttccctctcagtcattcattact |
28382880 |
T |
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| Q |
109 |
gataacacgtttaaaaaatagagagaaacacgtaatgaaagatatagaacttaaaacgagaaacaagagatgggacaagcaaataagagtcatttcaggg |
208 |
Q |
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| T |
28382881 |
gataacacatttaaaaaatagagagaaacacgtaatgaaagatatagaacttggaaggagaaacaagagatgggacaagcaaataagagtcatttcaggg |
28382980 |
T |
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| Q |
209 |
ttaatccccaagtaagt |
225 |
Q |
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||||||||||||||||| |
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| T |
28382981 |
ttaatccccaagtaagt |
28382997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 28387135 - 28387344
Alignment:
| Q |
9 |
tccatgatttagttccactattttaggaaggaagttggtagggggttgcactctatgaataaatgtcagtttcctttttccctctcagtcattcattact |
108 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| |
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| T |
28387135 |
tccatgatttagttccattattttaggaaggaagttgatagagggttacactctatgaataattgtccgttcccttttttcctctcagtcattcattact |
28387234 |
T |
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| Q |
109 |
gataacacgtttaaaaaatagagagaaacacgtaatgaaagatatagaacttaaaacgagaaacaagagatgggacaagcaaataagagtcatttcaggg |
208 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
28387235 |
gatatcacatttaaaaaatagagagaaacacgtaatgaaagatataaaacttagaaggagaaacaagagaagggacaagcaaataagagtcatttca-ga |
28387333 |
T |
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| Q |
209 |
ttaatccccaa |
219 |
Q |
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| T |
28387334 |
ttaatccccaa |
28387344 |
T |
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