View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_3 (Length: 541)
Name: NF5877_low_3
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Complemental strand, 41082616 - 41082113
Alignment:
| Q |
17 |
ataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082616 |
ataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagta |
41082517 |
T |
|
| Q |
117 |
cata--cttcataaaaaataatatttgtacgtacaaa----catcggttcccattgcatttgtgtgggtaaatatggaagaattctgttaaatataaaat |
210 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082516 |
catatacttcataaaaaataatatttgtacgtacatatatacatcggttcccattgcatttgtgtgggtaaatatggaagaattctgttaaatataaaat |
41082417 |
T |
|
| Q |
211 |
ttgatcacaccagaatatagatctgtataataatgtttttaagattaccgtgttttcttctgttccccctggctaccgtaccaattctctattaaatgta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082416 |
ttgatcacaccagaatatagatctgtataataatgtttttaagattaccgtgttttcttctgttccccctggctaccgtaccaattctctattaaatgta |
41082317 |
T |
|
| Q |
311 |
aataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaacaatttctttcttacag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082316 |
aataaccatacagggcaagctactacctatttatggagcatagtgtctttattttttgctttaaaattctatttcaacttcaacaatttctttcttacag |
41082217 |
T |
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| Q |
411 |
cttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagctattaatattttcacacatttactattttttatt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41082216 |
cttaaactagctggcctattaaccaatgtctggctcatttagtacaattgttacaagaatatcagctattaatattttcacacatttactatttattatt |
41082117 |
T |
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| Q |
511 |
caac |
514 |
Q |
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|||| |
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| T |
41082116 |
caac |
41082113 |
T |
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