View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5877_low_4 (Length: 525)

Name: NF5877_low_4
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5877_low_4
NF5877_low_4
[»] chr1 (1 HSPs)
chr1 (15-510)||(3948853-3949358)
[»] chr3 (1 HSPs)
chr3 (182-309)||(48492333-48492460)


Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Complemental strand, 3949358 - 3948853
Alignment:
Q  15 gacacgtcagcaccgggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaag 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3949358 gacacatcagcaccgggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaag 3949259  T
Q  115 tttcggtggtgcaagtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3949258 tttcggtggtgcaagtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggt 3949159  T
Q  215 tcattcaagtaagtcaacctcgtcatatcttcaaatccaccaagctcatcttcatccgcatctctcaagcacaatttctccggcgaaacaacaacctgca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3949158 tcattcaagtaagtcaacctcgtcatatcttcaaatccaccaagctcatcttcatccgcatctctcaagcacaatttctccggcgaaacaacaacctgca 3949059  T
Q  315 caattcctccggcaccgtcacaactcaaattatcaacaattacaactaaaataacaacaattca----------gcaagaaaactcaccttcttcccgga 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||    
T  3949058 caattcctccggcaccgtcacaactcaaattatcaacaattacaaccaaaataacaacaattcagcaacaaacagcaagaaaactcaccttcttcccgga 3948959  T
Q  405 atcagttacaagatgaacggagttgtcatcagaatcgattacttcagcagctacccacgctaattccttatccggaacccaaaccgttgaacctttacgt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3948958 atcagttacaagatgaacggagttgtcatcagaatcgattacttcagcagctacccacgctaattccttatccggaacccaaaccgttgaacctttgcgt 3948859  T
Q  505 acattc 510  Q
    ||||||    
T  3948858 acattc 3948853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 48492460 - 48492333
Alignment:
Q  182 tatctcctccgaatattatacaaaactcccggttcattcaagtaagtcaacctcgtcatatcttcaaatccaccaagctcatcttcatccgcatctctca 281  Q
    ||||| |||||||||||||||||||| || ||||||||||| ||| |||| |||||||||||||||| ||||||  | |||||||||||||||||||||     
T  48492460 tatcttctccgaatattatacaaaacccctggttcattcaaataaatcaatctcgtcatatcttcaactccaccgtgttcatcttcatccgcatctctcg 48492361  T
Q  282 agcacaatttctccggcgaaacaacaac 309  Q
       ||| ||||||||| | |||||||||    
T  48492360 gaaacagtttctccggagcaacaacaac 48492333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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