View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_5 (Length: 493)
Name: NF5877_low_5
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 483
Target Start/End: Complemental strand, 53097796 - 53097333
Alignment:
| Q |
15 |
agaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcctaccaattgtggtactaa |
114 |
Q |
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| T |
53097796 |
agaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcctaccagttgtggtactaa |
53097697 |
T |
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| Q |
115 |
tgctgacaatgaagtataccgtgaatcgttaatgaagaattcggtttctcaggaacaagaggagagtactaatgctacttttcaaggttatttattcttt |
214 |
Q |
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| T |
53097696 |
tgctgacaatgaagtataccgtgaatcgttactgaagaattcggtttctca------agaggagagtactaatgctacttttcaaggttatttattctct |
53097603 |
T |
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| Q |
215 |
--atcacattgctttcattagttatttaattaataataataattactgttttatgaatttctgattaannnnnnnnnatttgtcatgtgttttagcctca |
312 |
Q |
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| T |
53097602 |
ctatcacattgctttcattagttatttaattaataataataattactgttttatgaatttctgattaatttttttt-atttgtcatgtgttttagcctca |
53097504 |
T |
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| Q |
313 |
gaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagttcaagtgaaaccattgatgttgatgacaatgatttaa |
412 |
Q |
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| T |
53097503 |
gaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagttcaagtgaaaccattgatgttgatgacaatgatttaa |
53097404 |
T |
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| Q |
413 |
ctgggagtgcagataatttggtggcaactcaaagcactgctccaaaattaaatctgcagggtgtgcctatg |
483 |
Q |
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| T |
53097403 |
ctgggagtgcagataatttggtggcaactcaaatcactgctccaaaagtaaatctgcagggtgtgcctatg |
53097333 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 8021246 - 8021307
Alignment:
| Q |
36 |
ccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcct |
97 |
Q |
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|||| |||||||||||| ||||||| || |||||||| ||||| ||||||| |||||||||| |
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| T |
8021246 |
ccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcct |
8021307 |
T |
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