View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5877_low_6 (Length: 474)
Name: NF5877_low_6
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 192 - 466
Target Start/End: Complemental strand, 7488639 - 7488365
Alignment:
| Q |
192 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagctcagaagggatatcagagaagatgaatttagga |
291 |
Q |
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| T |
7488639 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagcttagaagggatatcagagaagatgaatttagga |
7488540 |
T |
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| Q |
292 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488539 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
7488440 |
T |
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| Q |
392 |
cctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatg |
466 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7488439 |
cctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatg |
7488365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 7488827 - 7488705
Alignment:
| Q |
2 |
tctgcgtatgttgaatttgttttgtgatcattcataaaagaagaaaatatatatatttgaacacagtacatgcctgcaacgttctcagttcagttttgtt |
101 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488827 |
tctgcctatgttgaatttgttttgtgatcattcataaaagaagaaaatatatat--ttgaacacagtacatgcctgcaacgttctcagttcagttttgtt |
7488730 |
T |
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| Q |
102 |
ctgttcattgaatctgctatgttga |
126 |
Q |
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| T |
7488729 |
ctgttcattgaatctgctatgttga |
7488705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 7475700 - 7475563
Alignment:
| Q |
267 |
gatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtct |
366 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||| | |||||| ||||||||| ||| |
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| T |
7475700 |
gatatcggagaagatgagtttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttct |
7475601 |
T |
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| Q |
367 |
tggaatgatcttactcagaaccccacctttctgaaaag |
404 |
Q |
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| T |
7475600 |
tggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 7873146 - 7873275
Alignment:
| Q |
292 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
391 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| || | |
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| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
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| Q |
392 |
cctttctgaaaaggaggcacataaacatgt |
421 |
Q |
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||||| ||||||| ||||| || ||||||| |
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| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgt |
7873275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 268 - 447
Target Start/End: Original strand, 6943480 - 6943659
Alignment:
| Q |
268 |
atatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtctt |
367 |
Q |
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||||| |||| | |||||||||| ||||||||||||| |||||||||| |||||| || ||||| ||||||||| ||| |||||||||||||| |||| |
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| T |
6943480 |
atatcggagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatctt |
6943579 |
T |
|
| Q |
368 |
ggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatcctt |
447 |
Q |
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|||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||| ||||||| ||||||||||||| |
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| T |
6943580 |
ggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
6943659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 7873012 - 7873048
Alignment:
| Q |
199 |
ataaagtttgtttcattgactcctaatttgtaggtta |
235 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |
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| T |
7873012 |
ataacgtttgtttcattgactcctaatttgtcggtta |
7873048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 42053823 - 42053788
Alignment:
| Q |
60 |
gaacacagtacatgcctgcaacgttctcagttcagt |
95 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
42053823 |
gaacacagtacatggctgcaacgttctcagttcagt |
42053788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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