View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_low_7 (Length: 443)
Name: NF5877_low_7
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 36221397 - 36221804
Alignment:
| Q |
16 |
atgaatatactaatcaaaattatcaaatccgtcaccaccctttgaaaagaaaatcaaatcaattccatcactaatcatcacactttgaaatcttaaacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36221397 |
atgaatatactaatcaaaattatcaaatccgtcaccacccttttaaaagaaaatcaaatcaattccatcactaatca---cactttgaaatcttaaacaa |
36221493 |
T |
|
| Q |
116 |
tattgagtaacttccctatgccaccttgagctgcttgtgttcaagcttatgagtagtattcaaatcaacatgaacaaatgctctttcaatttcaggtaat |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221494 |
tattgagtaacttctctatgccaccttgagctgcttgtgttcaagcttatgagtagtattcaaatcaacatgaacaaatgctctttcaatttcaggtaat |
36221593 |
T |
|
| Q |
216 |
ttttcaagcttatcttgaagtgtctcaccaatgtcatgtgcttgaataagtgacatttcttccgatacaactatgtctacctcaacaaaataattggtac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36221594 |
ttttcaagcttatcttgaagtgtctcaccaatgtcatgtgcttgaataagtgacatttcttccgatacaactatgtctacctcaacaaaataattggtcc |
36221693 |
T |
|
| Q |
316 |
caaatgtgtaggctctcaatgtatcaatgtgtttgatctccttgtcatggttccaacaaaggtatgttatctttgcaaggtactccggtggagctgtttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221694 |
caaatgtgtaggctctcaatgtatcaatgtgtttgatctccttgtcatggttccaacaaaggtatgttatctttgcaaggtactccggtggagctgtttt |
36221793 |
T |
|
| Q |
416 |
tccaatcaatg |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
36221794 |
tccaatcaatg |
36221804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 346
Target Start/End: Original strand, 18643090 - 18643287
Alignment:
| Q |
149 |
cttgtgttcaagcttatgagtagtattcaaa-tcaacatgaacaaatgctctttcaatttcaggtaatttttcaagcttatcttgaagtgtctcaccaat |
247 |
Q |
| |
|
|||||||||| || |||||||| |||||||| |||| || ||||| |||||||||| |||||| | || ||||| || |||||||||||||||||||| |
|
|
| T |
18643090 |
cttgtgttcaggcctatgagta-tattcaaaatcaatgtgcacaaaagctctttcaacttcaggaagttgctcaagtttctcttgaagtgtctcaccaat |
18643188 |
T |
|
| Q |
248 |
gtcatgtgcttgaataagtgacatttcttccgatacaactatgtctacctcaacaaaataattggtaccaaatgtgtaggctctcaatgtatcaatgtg |
346 |
Q |
| |
|
| ||||||||| | | | ||| ||||| | | ||| ||||| || ||||||||||||| | |||||||||||| ||||||| ||||| ||||| |
|
|
| T |
18643189 |
attgtgtgcttgatttaaaggcatatcttctggcaaaacaatgtccacttcaacaaaataatgagcaccaaatgtgtatgctctcacagtatctatgtg |
18643287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 352
Target Start/End: Original strand, 27307659 - 27307834
Alignment:
| Q |
177 |
aaatcaacatgaacaaatgctctttcaatttcaggtaatttttcaagcttatcttgaagtgtctcaccaatgtcatgtgcttgaataagtgacatttctt |
276 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || | || ||| ||||| ||||||||||| |||||||||| |||||||| | || |||| |||| |
|
|
| T |
27307659 |
aaatcaatgtgaacaaaagctctttcaacttctggaagttgttctagcttctcttgaagtgtttcaccaatgttgtgtgcttggttgagaaacatgtctt |
27307758 |
T |
|
| Q |
277 |
ccgatacaactatgtctacctcaacaaaataattggtaccaaatgtgtaggctctcaatgtatcaatgtgtttgat |
352 |
Q |
| |
|
| | || ||| ||||| || || ||||| |||| | |||||||||||| ||||| | |||||| ||||| ||||| |
|
|
| T |
27307759 |
ctggtaaaacaatgtcaacttccacaaagtaatctgcaccaaatgtgtatgctctaactgtatctatgtgcttgat |
27307834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University