View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5877_low_8 (Length: 402)
Name: NF5877_low_8
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5877_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 33 - 386
Target Start/End: Complemental strand, 2582526 - 2582173
Alignment:
| Q |
33 |
ataattaaagccaattgaaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagtagatga |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2582526 |
ataattaaagccaattgaaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagttgatga |
2582427 |
T |
|
| Q |
133 |
acgtgatcaaatgatgttagaagcaaaaagaaaaacccgaaagagaatcacaatcataagcttatcctcaataatcttcattggtgttgtaattgcagct |
232 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2582426 |
acatgatcaaatgatgttagaagcaaaaagaaaaacccgaaagagaatcacaatcataagcttatcttcaataatcttcattggtgttgtaattgcagct |
2582327 |
T |
|
| Q |
233 |
gtattaggagttgttaactcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582326 |
gtattaggagttgttaactcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacat |
2582227 |
T |
|
| Q |
333 |
tgtacaaagattcatgttataacagtcttagttctattgttggctcaggaaaag |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582226 |
tgtacaaagattcatgttataacagtcttagttctattgttggctcaggaaaag |
2582173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University