View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5878-Insertion-1 (Length: 1003)
Name: NF5878-Insertion-1
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 779; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 9 - 922
Target Start/End: Original strand, 32423607 - 32424519
Alignment:
| Q |
9 |
catatttccttaccagattatcggtaaagcttccattgaatagctcctggtctgaatggagaagagcctttttagctagtaaattcttgaagtataggtt |
108 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423607 |
catatttccttaccagattatcggtagagcttccattgaatagctcctggtctgaatggagaagagcctttttagctagtaaattcttgaagtataggtt |
32423706 |
T |
|
| Q |
109 |
atcgaaatgagtcggtgtttgatggtcgaggggttcaagcacattgtcgtttccacttctggggcatttgttttgtagagactttctaaataaggagtca |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423707 |
atcgaaatgagtcggtgtttgatggtcgaggggttcaagcacattgtcatttccacttctggggcatttgttttgtagagactttctaaataaggagtca |
32423806 |
T |
|
| Q |
209 |
acgttggagtcattgtagatgtgtgctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttgaaa |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423807 |
acgttggagtcattgtagatgtgtgctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttgaaa |
32423906 |
T |
|
| Q |
309 |
catagtactaatattggacattaattgaaggcgccttaattgaatgccaaattcttcttactgagaattttttaataaagttgtggtcatgaatcatgat |
408 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32423907 |
ca--gtactaatattggacattaattgaaggcgccttaattgaatgccaaattcttcttactgagaatttttgaataaagttgtggtcatgaatcatgat |
32424004 |
T |
|
| Q |
409 |
aaagcattaatatattgggatactgtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgcttagat |
508 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424005 |
aaagcattaatatatagggatactgtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgcttagat |
32424104 |
T |
|
| Q |
509 |
tgagaaatggtgcaggaattgagttattggcatcagatctactagctgtgattgaatcccttcttcccaagcctacattccatgaagggcctcctagctg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424105 |
tgagaaatggtgcaggaattgagttattggcatcagatctactagctgtgattgaatcccttcttcccaagcctacattccatgaagggcctcctagctg |
32424204 |
T |
|
| Q |
609 |
taaattccaacaaccatataaccctttatagatcaattaaatcactctaatgaagagtatagtatgttatcattgtgttctattggaatatatatgatgt |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||| ||||||||| |
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| T |
32424205 |
taaattccaacaaccatataaccctttatagatcaattaaatcactctaatgaagaggatagtacggtatcat--tgttctattgga----atatgatgt |
32424298 |
T |
|
| Q |
709 |
tacataatagaatttatattttgatacaccaatttacatc-aaattccacaataatctagatggctgacatggttcacatatgtggttaatgaatataac |
807 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424299 |
tacatgatagaatttatattttgaaacaccaatttacatcaaaattccacaataatctagatggctgacatggttcacatatgtggttaatgaatataac |
32424398 |
T |
|
| Q |
808 |
aatgtgttccaattcattatccatccacttaacac-attaacgacgatttccagatgtatatttgaatat-aatcgtg--ttattaatttcatta-attt |
902 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||| |
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| T |
32424399 |
aatgtgttccaattcattatccatccacttaacacaattaacaacgatttccagatgtatatttgaatataaatcgtggttaattaatgtcattatattt |
32424498 |
T |
|
| Q |
903 |
g-acatctaaaagttatgtat |
922 |
Q |
| |
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| |||||||||| |||||||| |
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|
| T |
32424499 |
gaacatctaaaaattatgtat |
32424519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 622
Target Start/End: Original strand, 32430709 - 32431306
Alignment:
| Q |
9 |
catatttccttaccagattatcggtaaagcttcca---ttgaatagctcctggtctgaatggagaagagcctttttagctagtaaattcttgaagtatag |
105 |
Q |
| |
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||||||||||||||||||||| ||| | |||||| ||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32430709 |
catatttccttaccagattattagtagaacttccaatattgaacaactcatggtctgaatggagaagagtctttttagctagtaaattcttgaagtatag |
32430808 |
T |
|
| Q |
106 |
gttatcgaaatgagtcggtgtttgatggtcgaggggttcaagcacattgtcgtttccacttctggggcatttgttttgtagagactttctaaataaggag |
205 |
Q |
| |
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|||||| ||||| ||||||||||||| ||||| |||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| | |
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| T |
32430809 |
gttatcaaaatgtgtcggtgtttgatagtcgaagggttcgaggacattgtcatttccacttctggggcacttgttttgtagagactttctaaacaagggg |
32430908 |
T |
|
| Q |
206 |
tcaacgttggagtcattgtagatgtgtgctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttg |
305 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||| |||||||||| ||| |
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|
| T |
32430909 |
tcaacgttggagtcattgtaaatgtgtgctcgaaattgtacacatcgagcgagaccaattgtatgtgcacctgatattcaagatatactcaattgaattg |
32431008 |
T |
|
| Q |
306 |
aaacatagtactaatattggacattaattgaaggcgccttaattgaatgccaaattcttcttactgagaattttttaataaagttgtggtcatgaatcat |
405 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
32431009 |
aaacatagtactaatattgaaca---------------ttaattgaatgtcaaattcttcttcgagagaatttttgaataaagttgtggtcatgaatcat |
32431093 |
T |
|
| Q |
406 |
gataaagcattaatatattgggatactgtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgctta |
505 |
Q |
| |
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||||||||||||||| || ||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
32431094 |
gataaagcattaata----ggaatactatggtacctgaaagagccaccaagtcctcaactgagagcccttggttagcaaaatttgttttgagagtgctta |
32431189 |
T |
|
| Q |
506 |
gattgagaaatggtgcaggaattgagttattggcatcagatctactagctgtgattgaatcccttcttcccaagcctacattccatgaagggcctcctag |
605 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
32431190 |
gattgaaaaagggtgcaggaattgagttattggcatcagacctactagctgtgattgagtcccttcttcccaagcctacatcccatgaagggcctcctag |
32431289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 790 - 843
Target Start/End: Original strand, 37137069 - 37137122
Alignment:
| Q |
790 |
gtggttaatgaatataacaatgtgttccaattcattatccatccacttaacaca |
843 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||||||| |||||| |
|
|
| T |
37137069 |
gtggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacaca |
37137122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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