View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5878-Insertion-2 (Length: 1002)

Name: NF5878-Insertion-2
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5878-Insertion-2
NF5878-Insertion-2
[»] chr5 (11 HSPs)
chr5 (15-884)||(24233573-24234455)
chr5 (337-891)||(35246062-35246628)
chr5 (580-747)||(22166407-22166574)
chr5 (633-756)||(42366258-42366381)
chr5 (633-756)||(6218613-6218736)
chr5 (498-749)||(19841853-19842114)
chr5 (155-189)||(32664100-32664134)
chr5 (513-585)||(6218109-6218181)
chr5 (660-746)||(23646797-23646883)
chr5 (660-746)||(23811690-23811776)
chr5 (689-731)||(31293502-31293544)
[»] chr1 (13 HSPs)
chr1 (379-891)||(42913695-42914222)
chr1 (580-869)||(4693888-4694179)
chr1 (622-892)||(51410854-51411127)
chr1 (337-641)||(43913043-43913356)
chr1 (642-749)||(32590676-32590783)
chr1 (579-756)||(3854162-3854339)
chr1 (690-888)||(43912820-43913019)
chr1 (337-469)||(4693699-4693831)
chr1 (633-756)||(51987638-51987761)
chr1 (660-746)||(27895330-27895416)
chr1 (700-746)||(44164122-44164168)
chr1 (660-731)||(17541334-17541405)
chr1 (814-869)||(28970633-28970688)
[»] chr4 (9 HSPs)
chr4 (337-756)||(17403380-17403808)
chr4 (785-892)||(13554734-13554842)
chr4 (688-754)||(39235839-39235905)
chr4 (648-754)||(55109585-55109691)
chr4 (696-731)||(19145561-19145596)
chr4 (495-585)||(55109423-55109513)
chr4 (827-891)||(17403897-17403962)
chr4 (155-184)||(33392271-33392300)
chr4 (695-724)||(53101483-53101512)
[»] chr6 (7 HSPs)
chr6 (439-891)||(18093302-18093762)
chr6 (578-749)||(15472971-15473142)
chr6 (578-720)||(15183894-15184036)
chr6 (578-731)||(15160295-15160450)
chr6 (607-749)||(15170289-15170431)
chr6 (607-749)||(15179061-15179203)
chr6 (690-731)||(3024951-3024992)
[»] chr7 (11 HSPs)
chr7 (337-583)||(34148612-34148858)
chr7 (337-583)||(34178266-34178512)
chr7 (785-892)||(9688357-9688465)
chr7 (682-758)||(34148504-34148580)
chr7 (682-758)||(34178544-34178620)
chr7 (690-747)||(42266161-42266218)
chr7 (710-749)||(29663195-29663234)
chr7 (695-747)||(923912-923964)
chr7 (702-746)||(21415598-21415642)
chr7 (690-728)||(9600367-9600405)
chr7 (690-728)||(9827938-9827976)
[»] chr2 (10 HSPs)
chr2 (633-758)||(28920303-28920428)
chr2 (578-754)||(35431275-35431451)
chr2 (578-731)||(23249850-23250003)
chr2 (578-732)||(3250249-3250403)
chr2 (579-756)||(33560295-33560470)
chr2 (660-757)||(10234979-10235076)
chr2 (655-746)||(32116386-32116477)
chr2 (141-174)||(9114145-9114178)
chr2 (115-172)||(18645144-18645201)
chr2 (709-746)||(19177327-19177364)
[»] chr8 (9 HSPs)
chr8 (642-754)||(30702412-30702524)
chr8 (578-754)||(18004484-18004660)
chr8 (579-756)||(6744293-6744470)
chr8 (642-754)||(30288441-30288553)
chr8 (579-756)||(6654555-6654732)
chr8 (579-756)||(6734957-6735134)
chr8 (690-755)||(23636716-23636781)
chr8 (695-746)||(11961801-11961852)
chr8 (690-731)||(28211175-28211216)
[»] chr3 (10 HSPs)
chr3 (579-740)||(28033688-28033849)
chr3 (660-758)||(54264839-54264936)
chr3 (651-756)||(31887976-31888081)
chr3 (642-754)||(11294968-11295080)
chr3 (624-754)||(31882088-31882211)
chr3 (690-746)||(30828983-30829039)
chr3 (688-745)||(20769430-20769487)
chr3 (132-188)||(8502574-8502630)
chr3 (660-748)||(22757463-22757551)
chr3 (697-758)||(9167012-9167073)
[»] scaffold1243 (1 HSPs)
scaffold1243 (578-720)||(1833-1975)
[»] scaffold0011 (1 HSPs)
scaffold0011 (711-746)||(249667-249702)


Alignment Details
Target: chr5 (Bit Score: 673; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 884
Target Start/End: Complemental strand, 24234455 - 24233573
Alignment:
Q  15 tcataactacatctcatgtgattaaaatctacaaagatatctgctactctatccagaataaatataattaaaagtggtggttgaaaatataatctatagt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24234455 tcataactacatctcatgtgattaaaatctacaaagatatctgctactctatccagaataaatataattaaaagtggtagttgaaaatataatctatagt 24234356  T
Q  115 taaaaatttcgttcatatacaacaaattttcaactataacttttgtttatatttcattctagagga---agtacaatggagtgcaagtttgaattaacaa 211  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  24234355 taaaaatttcgttcacatacaacaaattttcaactataatttttgtttatatttcattctagaggaggaagtacaatggagtgcaagtttgaattaacaa 24234256  T
Q  212 ttctcctcttttctatgtaagtttcatcattgaaatctttaaaatataacaaaaatttagtgtttaataacgtttcaaacaaaaatagaatcaaacaatg 311  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  24234255 ttctcctcttttctatgtaagtttcatcgttgaaatgtttaaaataaaacaaaaatttagtgtttaataacgtatcaaacaaaaatagaatcaaactatg 24234156  T
Q  312 atttgttgatactatcaattatatagtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgtt 411  Q
    ||||||||||||||||||||||| | |||||||  || ||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||| ||    
T  24234155 atttgttgatactatcaattatacactaggagaactcctcatcacgaagacatttattgcataggtggttgcagttgtccggagacgacgaatcatcttt 24234056  T
Q  412 ttttcagttgcgatatctttggcattgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatca 511  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  24234055 ttttcagttgcgacatctttggcattgtttggcatcgggtttaccaacggctaggtgtctctttcatttctccaaatgctagtcgtgaccattttcatca 24233956  T
Q  512 atttggccacatggcggggtttcctagagctacacattctttcttcaaagttatctgacatgcttg---------tgtttggaaggaaagaaacaacaaa 602  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||    
T  24233955 atttggccacatgacggggtttccgagagctacacattctttcttcaaagttatctggcatgcttgcgtttggacagtttggaaggaaagaaacaacaaa 24233856  T
Q  603 atcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttca 702  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24233855 atctttaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcataggttaacttctgctttca 24233756  T
Q  703 gttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagtttctattcatctatgtacctgtgtttgatttggcaacagattatgg 802  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24233755 gttataatgactggtggcggcaccatttaacttgtatgggtgttatggagtagtttctattcatctatgtacctgtgtttgatttggcaacagattctgg 24233656  T
Q  803 atgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttg 884  Q
    |||||| |||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  24233655 atgtgtttttattttgaggagtgtttctcttagcataccttgtgcaagatgaattgttcttggtgattattaattttattttg 24233573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 337 - 891
Target Start/End: Complemental strand, 35246628 - 35246062
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    |||||||||  ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||    
T  35246628 gtaggagagcacttcatcacgaagacatttattgcataggtggttgcggttgtccggagacgacgactcatctttttttcagttgcgacatctttggcat 35246529  T
Q  437 tgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcct 536  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||     
T  35246528 tgtttggcatcgggtttaccaatggctcggtgtctctttcatttctccaaatgctggtcatgaccattttcatcaatttggccacatggcggggttaccg 35246429  T
Q  537 agagctacacattctttcttcaaagttatctgacatgcttg---------tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatt 627  Q
    ||||  |||||||||||||||||||||||||  ||||||||          |||||||||||||||||||||| |||  | ||||||||||||||||||     
T  35246428 agagtcacacattctttcttcaaagttatctagcatgcttgcgtttggacagtttggaaggaaagaaacaacataattttaaaaaacaaagcatgggatg 35246329  T
Q  628 tgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccc 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||| ||||||||||||||||||||||||||||||||    
T  35246328 tgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggctcatatgttcacttcagctttcagttataatgactggtggcggcaccc 35246229  T
Q  728 tttaacttgtatgagtgttatgaagtagtttctattcatctatgtacctgtg---tttgatttggcaacagattatggatgtgtatttattttgaggagc 824  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||| |||||   |||  |||||||||||||  ||||| |||| || |||||||||      
T  35246228 tttaacttgtatgagtgttatggagtagtttttattcatctctgtagctgtgtttttttttttggcaacagatactggatttgta-ttcttttgaggaat 35246130  T
Q  825 gtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttggtttctt 891  Q
    | |||||||| |||||||||| | |||| | ||||||||||||| ||||||||| ||||||| |||||    
T  35246129 gattctcttaacacaccttgtgcgagataattcgttcttggtgattattaatttcattttggcttctt 35246062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 580 - 747
Target Start/End: Original strand, 22166407 - 22166574
Alignment:
Q  580 tttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggc 679  Q
    ||||||||||||||||||| |  ||| | | ||||||||||   || |||   ||||||||| |||| ||||||||||| |||||||||||| ||| |||    
T  22166407 tttggaaggaaagaaacaataggatcttcagaaacaaagcactagacttggttcaattattaaacaaagtaaagtttgtatctttttcttggttaagggc 22166506  T
Q  680 gcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtta 747  Q
    | ||||| ||||||  ||||||||||||||| |||||||||| |||||||||| ||||||| ||||||    
T  22166507 gaataggctaacttgagctttcagttataattactggtggcgacaccctttaatttgtatgggtgtta 22166574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 633 - 756
Target Start/End: Original strand, 42366258 - 42366381
Alignment:
Q  633 caattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaa 732  Q
    |||||||||||||| || |||||||| |||||||||||| ||| |||| ||||| ||||||| ||||||| |||||||||| ||||||| ||||||||||    
T  42366258 caattattagacaaagttaagtttgtatctttttcttggttaagggcgaataggctaacttcagctttcaattataatgaccggtggcgacaccctttaa 42366357  T
Q  733 cttgtatgagtgttatgaagtagt 756  Q
     ||||||| |||||| | ||||||    
T  42366358 tttgtatgggtgttagggagtagt 42366381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 633 - 756
Target Start/End: Original strand, 6218613 - 6218736
Alignment:
Q  633 caattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaa 732  Q
    |||||| ||||||| ||||||||||| |||||||||||| ||| |||| ||||| | ||||| |||||||||||||||||||||||| | ||||| ||||    
T  6218613 caattactagacaaagtaaagtttgtatctttttcttggttaagggcgaataggctcacttcagctttcagttataatgactggtggtgacacccgttaa 6218712  T
Q  733 cttgtatgagtgttatgaagtagt 756  Q
     ||||||  |||||| | ||||||    
T  6218713 tttgtataggtgttagggagtagt 6218736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 498 - 749
Target Start/End: Complemental strand, 19842114 - 19841853
Alignment:
Q  498 gaccattttcatcaatttggccacatggcggggtttcctagagctacacattctttcttcaaagttatctgacatgcttgtgtttgga---------agg 588  Q
    |||||| ||||||| ||||| |||||||||||||| ||  |   |||| || ||||| ||||||| ||||| ||||||||||||||||         |||    
T  19842114 gaccatcttcatcagtttggtcacatggcggggttaccacgttttacatatcctttcctcaaagtgatctggcatgcttgtgtttggattgtttgaaagg 19842015  T
Q  589 aaagaaacaaca-aaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcataggg 687  Q
    ||||||||||||  | |  |||||||||||||  || |||||   ||||||||| |||||||||||||| | |||||||| ||| |||| ||  ||| |     
T  19842014 aaagaaacaacatgattttttaaaaacaaagctcggaatttggtccaattattaaacaatgtaaagtttttgtctttttcatggttaaatgctaatatgc 19841915  T
Q  688 taacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatg 749  Q
    | ||||||  |||||||||||||||| | |||||||||||||||  |||||||||| |||||    
T  19841914 tcacttccattttcagttataatgacggatggcggcaccctttactttgtatgagtattatg 19841853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 32664100 - 32664134
Alignment:
Q  155 ttttgtttatatttcattctagaggaagtacaatg 189  Q
    |||||||||||||||||||||||||||||||||||    
T  32664100 ttttgtttatatttcattctagaggaagtacaatg 32664134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 513 - 585
Target Start/End: Original strand, 6218109 - 6218181
Alignment:
Q  513 tttggccacatggcggggtttcctagagctacacattctttcttcaaagttatctgacatgcttgtgtttgga 585  Q
    ||||| |||||||||||||| ||  ||  ||||||||||||||||| ||| |||||||||||||  |||||||    
T  6218109 tttggtcacatggcggggttaccacgatttacacattctttcttcagagtgatctgacatgcttacgtttgga 6218181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 746
Target Start/End: Complemental strand, 23646883 - 23646797
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||| |||||||||||||||  ||| |   |||| ||| |||||||| |||||||||||||| ||||||||| |||| ||| |||||    
T  23646883 tcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatgggtgtt 23646797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 746
Target Start/End: Original strand, 23811690 - 23811776
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||| |||||||||||||||  ||| |   |||| ||| |||||||| |||||||||||||| ||||||||| |||| ||| |||||    
T  23811690 tcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatgggtgtt 23811776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 31293544 - 31293502
Alignment:
Q  689 aacttccgctttcagttataatgactggtggcggcacccttta 731  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  31293544 aacttctgttttcagttataatgactgatggcggcacccttta 31293502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-139; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 379 - 891
Target Start/End: Original strand, 42913695 - 42914222
Alignment:
Q  379 gttgcggttgttcggagacgacgaatcatcgtttttt-----cagttgcgatatctttggcattgtttggcatcgggtttacccatggctcggtttctct 473  Q
    ||||||||||| ||||||||||||||||   ||||||     |  |||||| |||||||||| |||||||||||||||||||| |||||||| | |||||    
T  42913695 gttgcggttgtccggagacgacgaatcaatttttttttctttctattgcgacatctttggcagtgtttggcatcgggtttaccaatggctcgatgtctct 42913794  T
Q  474 ttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcctagagctacacattctttcttcaaagttatctgacatg 573  Q
    ||||||| ||| |||| |||||| ||||||| |||||||||| | |||||||||||||| || |||||||| |||||||||||||||||||| || ||||    
T  42913795 ttcatttatcccaatgatagtcgcgaccattctcatcaatttagtcacatggcggggttaccgagagctacgcattctttcttcaaagttatatggcatg 42913894  T
Q  574 cttgtgtttg---------gaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttcttt 664  Q
    |||| |||||         ||||||||||||||||| |||  ||||| |||||||||| |||||| | |||||| || ||||||||||||||||||||||    
T  42913895 cttgcgtttggacactttggaaggaaagaaacaacataatatttaaagacaaagcatgagatttgtctcaattaataaacaatgtaaagtttgtttcttt 42913994  T
Q  665 ttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagtttctattc 764  Q
    |||||||||||||||||||| | | | ||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  42913995 ttcttggctaaaggcgcatatgctgatttcagctttcagctataatgactggtggcggcaccctttaacttgtatggatgttatggagtagcttctattc 42914094  T
Q  765 atctatgtacctgtgtttgatttggcaacagattatggatgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttg 864  Q
    |||| |||| ||||||||||||||| |||||||  ||||  ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  42914095 atctttgtagctgtgtttgatttggtaacagatactggacttgtatttcttttgaggagcgtttctcttagcacaccttatgcaagatgaatcgttcttg 42914194  T
Q  865 gtga-tattaattttattttggtttctt 891  Q
    |||| ||||||||| |||||||||||||    
T  42914195 gtgattattaatttcattttggtttctt 42914222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 580 - 869
Target Start/End: Original strand, 4693888 - 4694179
Alignment:
Q  580 tttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggc 679  Q
    |||||||||||||||||||||  ||  |||||| ||||||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4693888 tttggaaggaaagaaacaacatgatttttaaaagcaaagcaagagatttgacacaattattagacatcgtaaagtttgtttctttttcttggctaaaggc 4693987  T
Q  680 gcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagtttct---attcatctatgtacct 776  Q
      ||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||| |    ||||||| | ||  |    
T  4693988 taataggctaacttcagctttcagttataatgaatggtggcgacaccctttaacttgtatgtgtgttatggagtagtttttttccttcatctttttagtt 4694087  T
Q  777 gtgtttgatttggcaacagattatggatgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtgat 869  Q
    |||||| ||||||||||||||  | ||| |||| || |||||||||| | |||||||  |||||||| | |||||||||||||||||||||||    
T  4694088 gtgttttatttggcaacagatacttgatttgta-ttcttttgaggagtgattctctttacacaccttatgcaagatgaatcgttcttggtgat 4694179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 622 - 892
Target Start/End: Original strand, 51410854 - 51411127
Alignment:
Q  622 gggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcg 721  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||    
T  51410854 gggatttgacacaattattagacattgtaaattttgtttctttttcttggctaaaggctaataggctaacttcagctttcagttataatgactggtggcg 51410953  T
Q  722 gcaccctttaacttgtatgagtgttatgaagtagtttctattc---atctatgtacctgtgtttgatttggcaacagattatggatgtgtatttattttg 818  Q
    | ||||||||||||||||| |||||||| |||||||| | |||   |||| | ||  ||||||| ||||||||||||||  | ||| |||| || |||||    
T  51410954 gaaccctttaacttgtatgggtgttatggagtagttttttttcttcatctttttagttgtgttttatttggcaacagatacttgatttgta-ttcttttg 51411052  T
Q  819 aggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttggtttcttc 892  Q
    ||||| | ||||||| ||||||||||  | |||||||| | ||||||||| |||| |||| ||||||| ||||||    
T  51411053 aggagtgattctctttgcacaccttgcgcgagatgaattgctcttggtgattatttatttcattttggcttcttc 51411127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 337 - 641
Target Start/End: Complemental strand, 43913356 - 43913043
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    ||||||||| |||||||||||||||||| | |||||||| ||| |||||||||  ||||||||||||||||| |||||| || |||||  ||||||| |     
T  43913356 gtaggagagctcttcatcacgaagacatcttttgtataggtggctgcggttgtcaggagacgacgaatcatcttttttttagatgcgacgtctttggaaa 43913257  T
Q  437 tgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcct 536  Q
    ||||||||   |||||||||  ||| |||| ||||||||||||||||||||| || || |||||||||||||| | |||  ||| ||||||||||| ||     
T  43913256 tgtttggctaagggtttaccagtggatcggcttctctttcatttctccaaattctggttgtgaccattttcattagtttacccatatggcggggttaccg 43913157  T
Q  537 agagctacacattctttcttcaaagttatctgacatgcttg---------tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatt 627  Q
    |||| ||||||||||||||||||||||||||  ||||||||          ||||| ||||||||||||||||  ||  | |||||||||||| ||||||    
T  43913156 agagttacacattctttcttcaaagttatctcgcatgcttgcatttggacagtttgtaaggaaagaaacaacatgattttaaaaaacaaagcaagggatt 43913057  T
Q  628 tgacacaattatta 641  Q
    ||||||||||||||    
T  43913056 tgacacaattatta 43913043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 642 - 749
Target Start/End: Complemental strand, 32590783 - 32590676
Alignment:
Q  642 gacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatga 741  Q
    ||||||||||||||||| |||||| ||||| |||||||  ||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  32590783 gacaatgtaaagtttgtgtcttttacttggttaaaggctaataggctaacttccgctttcagttataatgaccggtggtggcaccctttaatttgtatgg 32590684  T
Q  742 gtgttatg 749  Q
    ||||||||    
T  32590683 gtgttatg 32590676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 579 - 756
Target Start/End: Complemental strand, 3854339 - 3854162
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||| |  ||  | ||||||||||||   || |||   |||||||||||| | ||||||||||| |||||||||||| ||| ||    
T  3854339 gtttggaaggaaagaaacaataggattttaaaaaacaaagcactagacttggttcaattattagacgaagtaaagtttgtatctttttcttggttaaggg 3854240  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagt 756  Q
    || ||| | | ||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||| | ||||||    
T  3854239 cgaataagctcacttcagctttcagttataatgactggtggcgacaccctttaatttgtatgggtgttagggagtagt 3854162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 690 - 888
Target Start/End: Complemental strand, 43913019 - 43912820
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtag-tttctattcatctatgtacctgtgtttgatttg 788  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||| | ||||||| | ||   |||||| |||||    
T  43913019 acttcagctttcagttatactgactggtggcggcaccctttaacttgtatgggtgttatggagtagttttttcttcatctctttagtagtgttttatttg 43912920  T
Q  789 gcaacagattatggatgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttggtt 887  Q
    |||||| ||  |  || |||| || |||||||||| | ||||||| ||||||||||| | |||||||| ||||||| ||| |||| |||| |||||||||    
T  43912919 gcaacaaatactttatttgta-ttcttttgaggagtgattctctttgcacaccttgtgcgagatgaattgttcttgatgattatttatttcattttggtt 43912821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 337 - 469
Target Start/End: Original strand, 4693699 - 4693831
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    ||||||| | |||||||||||||||||| | ||| |||| ||| |||||||||  ||||||||||||||||| ||||||||| || || |||||| |||     
T  4693699 gtaggagggctcttcatcacgaagacatcttttgcataggtggctgcggttgtcaggagacgacgaatcatctttttttcagctgtgacatctttagcaa 4693798  T
Q  437 tgtttggcatcgggtttacccatggctcggttt 469  Q
     |||||||   |||||||||  |||||| ||||    
T  4693799 cgtttggctcagggtttaccagtggctcagttt 4693831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 633 - 756
Target Start/End: Complemental strand, 51987761 - 51987638
Alignment:
Q  633 caattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaa 732  Q
    |||||||||||||| |||||||  |  |||||||| ||| |||  ||| ||||| ||||||| ||||||||||||||||||   ||||| ||||||||||    
T  51987761 caattattagacaaagtaaagtaagaatctttttcctggttaagagcgaataggttaacttcagctttcagttataatgacctatggcgacaccctttaa 51987662  T
Q  733 cttgtatgagtgttatgaagtagt 756  Q
     ||||||| |||||| | ||||||    
T  51987661 tttgtatgggtgttagggagtagt 51987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 660 - 746
Target Start/End: Original strand, 27895330 - 27895416
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    ||||||||||||||||||||  ||| | | |||| ||| ||||||||| |||||||||||||||||  |||| | |||||| |||||    
T  27895330 tctttttcttggctaaaggcatataagcttacttacgccttcagttatcatgactggtggcggcacaatttaccgtgtatgggtgtt 27895416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 700 - 746
Target Start/End: Complemental strand, 44164168 - 44164122
Alignment:
Q  700 tcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||    
T  44164168 tcagttaccatgactggtggcgccaccctttaacttgtatgagtgtt 44164122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 17541334 - 17541405
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcacccttta 731  Q
    ||||||||||||||||||||  ||| |   |||| |||||| |||||||||||||||||||| || ||||||    
T  17541334 tctttttcttggctaaaggcaaatatgcccactttcgcttttagttataatgactggtggcgacatccttta 17541405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 814 - 869
Target Start/End: Original strand, 28970633 - 28970688
Alignment:
Q  814 ttttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtgat 869  Q
    |||||||||| | ||||||| ||||||||||| | |||||||||| ||||||||||    
T  28970633 ttttgaggagtgattctctttgcacaccttgtgcgagatgaatcgctcttggtgat 28970688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 337 - 756
Target Start/End: Original strand, 17403380 - 17403808
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    ||||||||| |||||||||||||||||| ||||| |||| ||||||||||| |  ||||||||||||||||| ||||||||| ||| | |||||||||||    
T  17403380 gtaggagagctcttcatcacgaagacatatattgcataggtggttgcggttttctggagacgacgaatcatcattttttcagctgcaacatctttggcat 17403479  T
Q  437 tgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcct 536  Q
    ||||||||||||||||||||  |||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||     
T  17403480 tgtttggcatcgggtttaccagtggctcggtgactctttcatttctccaaatgctggtcgtgaccattttcatcaatttggccacatggcggggttaccg 17403579  T
Q  537 agagctacacattctttcttcaaagttatctgacatgcttgt---------gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatt 627  Q
    |||| |||| |||||||||||||||||||||| || ||||||         ||||||||||||||||||||||  ||  |||||||| |||| |||||||    
T  17403580 agaggtacaaattctttcttcaaagttatctggcaggcttgtgtttggacagtttggaaggaaagaaacaacaggatttttaaaaacgaagcttgggatt 17403679  T
Q  628 tgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccc 727  Q
    || |||| |||||||||| ||||||||||||||||||||||||||||||||   ||||  ||||||| |||||||||||||||||||| |||||||||||    
T  17403680 tgtcacagttattagacactgtaaagtttgtttctttttcttggctaaaggttaatagactaacttcagctttcagttataatgactgatggcggcaccc 17403779  T
Q  728 tttaacttgtatgagtgttatgaagtagt 756  Q
    |||| |||||||| | |||||| ||||||    
T  17403780 tttagcttgtatgggggttatggagtagt 17403808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 785 - 892
Target Start/End: Complemental strand, 13554842 - 13554734
Alignment:
Q  785 tttggcaacagattatggatgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttatttt 883  Q
    |||| ||||||||  ||||| ||||||| || |||||||| |||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  13554842 tttgacaacagatactggatttgtatttcttctgaggagcatttcacttaacacaccttgtacaagatgaattgttcttggtgattattaatttcatttt 13554743  T
Q  884 ggtttcttc 892  Q
    |||||||||    
T  13554742 ggtttcttc 13554734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 688 - 754
Target Start/End: Original strand, 39235839 - 39235905
Alignment:
Q  688 taacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagta 754  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| | ||| ||| |||||||| ||||    
T  39235839 taacttcagctttcagttataatgactggtgacggcaccctttgatttgcatgggtgttatggagta 39235905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 648 - 754
Target Start/End: Original strand, 55109585 - 55109691
Alignment:
Q  648 gtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtta 747  Q
    ||||||||||| |||||||||||| |||||||  | ||   |||||| ||||||||||||||||||| ||||||||   |||||| ||| ||| ||||||    
T  55109585 gtaaagtttgtgtctttttcttggttaaaggctaaaagcaaaacttctgctttcagttataatgactagtggcggcgttctttaatttgcatgggtgtta 55109684  T
Q  748 tgaagta 754  Q
    || ||||    
T  55109685 tggagta 55109691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 696 - 731
Target Start/End: Original strand, 19145561 - 19145596
Alignment:
Q  696 gctttcagttataatgactggtggcggcacccttta 731  Q
    ||||||||||||||||||||||||||||||||||||    
T  19145561 gctttcagttataatgactggtggcggcacccttta 19145596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 495 - 585
Target Start/End: Original strand, 55109423 - 55109513
Alignment:
Q  495 cgtgaccattttcatcaatttggccacatggcggggtttcctagagctacacattctttcttcaaagttatctgacatgcttgtgtttgga 585  Q
    ||||| ||| ||||||| ||||| |||||||||||||| ||  |   ||| |||||||| |||||||| ||||| |||||||| |||||||    
T  55109423 cgtgatcatcttcatcagtttggtcacatggcggggttaccgcgttttacccattcttttttcaaagtgatctggcatgcttgcgtttgga 55109513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 891
Target Start/End: Original strand, 17403897 - 17403962
Alignment:
Q  827 ttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttggtttctt 891  Q
    ||||||| ||||||||||||| |||||||| | ||||||||| |||| ||| |||||||| |||||    
T  17403897 ttctctttgcacaccttgtacgagatgaatagctcttggtgattatttattctattttggcttctt 17403962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 33392300 - 33392271
Alignment:
Q  155 ttttgtttatatttcattctagaggaagta 184  Q
    ||||||||||||||||||||||||||||||    
T  33392300 ttttgtttatatttcattctagaggaagta 33392271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 53101483 - 53101512
Alignment:
Q  695 cgctttcagttataatgactggtggcggca 724  Q
    ||||||||||||||||||||||||||||||    
T  53101483 cgctttcagttataatgactggtggcggca 53101512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 439 - 891
Target Start/End: Original strand, 18093302 - 18093762
Alignment:
Q  439 tttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcctag 538  Q
    ||||||||| ||||||||  ||||||||| |||| || ||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||| || ||    
T  18093302 tttggcatcaggtttaccagtggctcggtgtctcctttatttctccaaatgatggtcgtgaacattttcatcaatttggtcacatggcggggttaccgag 18093401  T
Q  539 agctacacattctttcttcaaagttatctgacatgcttgtgttt---------ggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttg 629  Q
    ||||||||||||||||||||||||||| ||  | ||||| ||||         ||||||| ||||| |||| |||  | || ||||||||| |||| |||    
T  18093402 agctacacattctttcttcaaagttatttggaaggcttgcgtttggacagtttggaaggacagaaataacagaattttcaacaacaaagcacgggacttg 18093501  T
Q  630 acacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctt 729  Q
    || ||||||||||||||||| ||||||||||||||||||||||| |||||  ||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  18093502 acccaattattagacaatgttaagtttgtttctttttcttggcttaaggctaataggctagcttcagctttcagttacaatgactggtggcggcaccctt 18093601  T
Q  730 taacttgtatgagtgttatgaagtagtttctattcatctatgtacctgtgtttgatttggcaacagattatggatgtgtatttattttgaggagcgtttc 829  Q
    ||||||||||| |||||||||| |||||| | ||||||| ||||  ||||||| ||||||||||||||  ||| | |||| ||||||||||||| | |||    
T  18093602 taacttgtatgggtgttatgaactagttt-tcttcatctctgtaattgtgttttatttggcaacagatactggttttgta-ttattttgaggagtgattc 18093699  T
Q  830 tcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttattttggtttctt 891  Q
    |||||||||| ||||| | |||||||||| || |||||| ||||||||| ||||||| |||||    
T  18093700 tcttagcacatcttgtgcgagatgaatcgctcctggtgattattaatttcattttggcttctt 18093762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 578 - 749
Target Start/End: Original strand, 15472971 - 15473142
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||||||| ||||  ||  |||||||||||||   |||||||   || ||||||||||||||||||||| | |||||||||||| ||||     
T  15472971 tgtttggaaggaaagaaataacaggatttttaaaaacaaagctcaggatttggttcacttattagacaatgtaaagtttatgtctttttcttggttaaaa 15473070  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatg 749  Q
    ||  ||| | | ||||| |||||||||||||||||||||| |||||||||||||   |||||| ||||||||    
T  15473071 gctaatatgctgacttctgctttcagttataatgactggttgcggcaccctttactatgtatgggtgttatg 15473142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 578 - 720
Target Start/End: Complemental strand, 15184036 - 15183894
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||| ||| |||| |||  |||||||||||||   |||||||   || ||||||||||||||||||||| |||||||||||||| ||||     
T  15184036 tgtttggaaggaaataaataacagaatttttaaaaacaaagctcaggatttggttcacttattagacaatgtaaagtttatttctttttcttggttaaaa 15183937  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggc 720  Q
    ||  ||| | | |||||||||||||||||||||||||||||||    
T  15183936 gcaaatatgctgacttccgctttcagttataatgactggtggc 15183894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 578 - 731
Target Start/End: Complemental strand, 15160450 - 15160295
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcatt--aaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaa 675  Q
    |||||||||||||||||| ||||  ||  ||  |||||||||||  ||||||||   || |||||| |||||||||||||| | |||||||||||| |||    
T  15160450 tgtttggaaggaaagaaataacatgatttttaaaaaaacaaagctcgggatttggttcacttattaaacaatgtaaagtttatgtctttttcttggttaa 15160351  T
Q  676 aggcgcatagggtaacttccgctttcagttataatgactggtggcggcacccttta 731  Q
    | ||  | | | |||||||||||||||||||||||||||||||||||||| |||||    
T  15160350 aagctaacatgctaacttccgctttcagttataatgactggtggcggcactcttta 15160295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 607 - 749
Target Start/End: Complemental strand, 15170431 - 15170289
Alignment:
Q  607 ttaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagtta 706  Q
    |||||||||||||   |||||||   || ||||||||||||||||||||| | |||||||||||| |||| ||  ||| | | |||||||||||||||||    
T  15170431 ttaaaaacaaagctcaggatttggttcacttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctgacttccgctttcagtta 15170332  T
Q  707 taatgactggtggcggcaccctttaacttgtatgagtgttatg 749  Q
    |||||||||| ||||| ||||||||   |||||| ||||||||    
T  15170331 taatgactggaggcggtaccctttactatgtatgtgtgttatg 15170289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 607 - 749
Target Start/End: Complemental strand, 15179203 - 15179061
Alignment:
Q  607 ttaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagtta 706  Q
    |||||||||||||   |||||||   || ||||||||||||||||||||| | |||||||||||| |||| ||  ||| | | |||||||||||||||||    
T  15179203 ttaaaaacaaagctcaggatttggttcacttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctgacttccgctttcagtta 15179104  T
Q  707 taatgactggtggcggcaccctttaacttgtatgagtgttatg 749  Q
    |||||||||| ||||| ||||||||   |||||| ||||||||    
T  15179103 taatgactggaggcggtaccctttactatgtatgtgtgttatg 15179061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 731
Target Start/End: Complemental strand, 3024992 - 3024951
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcacccttta 731  Q
    |||| |||||||||||||| |||| |||||||||||||||||    
T  3024992 acttacgctttcagttatactgaccggtggcggcacccttta 3024951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 2e-67; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 337 - 583
Target Start/End: Complemental strand, 34148858 - 34148612
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    ||||||||| |||||||||||||||||||| ||| |||| |||||||||||||  |||||||||||||| || ||||||||| ||||  |||||| |||     
T  34148858 gtaggagagctcttcatcacgaagacattttttgcataggtggttgcggttgtcaggagacgacgaatcgtctttttttcagctgcggcatctttagcaa 34148759  T
Q  437 tgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcct 536  Q
    ||||||||   |||||||||  ||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||| ||| ||||||| ||     
T  34148758 tgtttggctcagggtttaccagtggctcggtttatctttcatttctccaaattctggtcgtgaccattttcatcagtttggccatatgacggggttaccg 34148659  T
Q  537 agagctacacattctttcttcaaagttatctgacatgcttgtgtttg 583  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  34148658 agagttacacgttctttcttcaaagttatctggcatgcttgtgtttg 34148612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 337 - 583
Target Start/End: Original strand, 34178266 - 34178512
Alignment:
Q  337 gtaggagagttcttcatcacgaagacatttattgtatagatggttgcggttgttcggagacgacgaatcatcgttttttcagttgcgatatctttggcat 436  Q
    ||||||||| |||||||||||||||||||| ||| |||| |||||||||||||  |||||||||||||| || ||||||||| ||||  |||||| |||     
T  34178266 gtaggagagctcttcatcacgaagacattttttgcataggtggttgcggttgtcaggagacgacgaatcgtctttttttcagctgcggcatctttagcaa 34178365  T
Q  437 tgtttggcatcgggtttacccatggctcggtttctctttcatttctccaaatgctagtcgtgaccattttcatcaatttggccacatggcggggtttcct 536  Q
    ||||||||   |||||||||  ||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||| ||| ||||||| ||     
T  34178366 tgtttggctcagggtttaccagtggctcggtttatctttcatttctccaaattctggtcgtgaccattttcatcagtttggccatatgacggggttaccg 34178465  T
Q  537 agagctacacattctttcttcaaagttatctgacatgcttgtgtttg 583  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  34178466 agagttacacgttctttcttcaaagttatctggcatgcttgtgtttg 34178512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 785 - 892
Target Start/End: Complemental strand, 9688465 - 9688357
Alignment:
Q  785 tttggcaacagattatggatgtgtatttattttgaggagcgtttctcttagcacaccttgtacaagatgaatcgttcttggtga-tattaattttatttt 883  Q
    |||| ||||||||  ||||| ||||||| || |||||||| |||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  9688465 tttgacaacagatactggatttgtatttcttctgaggagcatttcacttaacacaccttgtacaagatgaattgttcttggtgattattaatttcatttt 9688366  T
Q  884 ggtttcttc 892  Q
    |||||||||    
T  9688365 ggtttcttc 9688357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 682 - 758
Target Start/End: Complemental strand, 34148580 - 34148504
Alignment:
Q  682 atagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagttt 758  Q
    ||||| ||||||| |||||||||||||||||| ||||| |||| ||  ||||||||||| |||||||| ||||||||    
T  34148580 ataggctaacttcagctttcagttataatgacgggtgggggcatcccgtaacttgtatgggtgttatggagtagttt 34148504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 682 - 758
Target Start/End: Original strand, 34178544 - 34178620
Alignment:
Q  682 atagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagttt 758  Q
    ||||| ||||||| |||||||||||||||||| ||||| |||| ||  ||||||||||| |||||||| ||||||||    
T  34178544 ataggctaacttcagctttcagttataatgacgggtgggggcatcccgtaacttgtatgggtgttatggagtagttt 34178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 690 - 747
Target Start/End: Complemental strand, 42266218 - 42266161
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtta 747  Q
    |||||||||||||||||||| ||| |||||||||||||||||  ||||||| ||||||    
T  42266218 acttccgctttcagttataacgaccggtggcggcaccctttactttgtatgggtgtta 42266161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 710 - 749
Target Start/End: Original strand, 29663195 - 29663234
Alignment:
Q  710 tgactggtggcggcaccctttaacttgtatgagtgttatg 749  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29663195 tgactggtggcggcaccctttatcttgtatgagtgttatg 29663234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 747
Target Start/End: Original strand, 923912 - 923964
Alignment:
Q  695 cgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtta 747  Q
    ||||||||||||||||||| |||||||||||| ||||  ||| ||||||||||    
T  923912 cgctttcagttataatgaccggtggcggcaccttttacgttgcatgagtgtta 923964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 702 - 746
Target Start/End: Complemental strand, 21415642 - 21415598
Alignment:
Q  702 agttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||    
T  21415642 agttatcatgactggtggcggcaccctttatcttgtatgggtgtt 21415598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 728
Target Start/End: Complemental strand, 9600405 - 9600367
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccct 728  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  9600405 acttccgctttcagttatactgattggtggcggcaccct 9600367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 728
Target Start/End: Complemental strand, 9827976 - 9827938
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccct 728  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  9827976 acttccgctttcagttatactgattggtggcggcaccct 9827938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 6e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 633 - 758
Target Start/End: Complemental strand, 28920428 - 28920303
Alignment:
Q  633 caattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaa 732  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  28920428 caattattagacactgtaaagtttgtttctttttcttggctaaaggctaatacgctaacttccgctttcagttataatgactggtggcggcaccctttac 28920329  T
Q  733 cttgtatgagtgttatgaagtagttt 758  Q
     ||||||| |||||||| ||||||||    
T  28920328 tttgtatgggtgttatggagtagttt 28920303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 578 - 754
Target Start/End: Original strand, 35431275 - 35431451
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||| ||||||||  ||| | ||| ||||||||   || |||  |||| |||| ||||||||||| ||||| || ||||||||| ||||     
T  35431275 tgtttggaaggaaacaaacaacatgatcttaaaagacaaagcagaagacttggaacaactatttgacaatgtaaaatttgtgtcattttcttggttaaat 35431374  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagta 754  Q
    ||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  35431375 gctaataggctaacttcagctttcagttataatgactggtggcggcaccctttaatttgtatgggtgttatggagta 35431451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 578 - 731
Target Start/End: Original strand, 23249850 - 23250003
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||||||||||||  ||  |||||||||||||    ||||||   || ||||||||||||||||||||| | |||||||||||| ||||     
T  23249850 tgtttggaaggaaagaaacaacaggatttttaaaaacaaagctcacgatttggttcacttattagacaatgtaaagtttatgtctttttcttggttaaaa 23249949  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggcggcacccttta 731  Q
    ||  ||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  23249950 gctaatatgctaacttccgctttcagttataatgactggtggcggaacccttta 23250003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 578 - 732
Target Start/End: Complemental strand, 3250403 - 3250249
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||||||||||||  ||| | ||| |||||||||  || |||  |||| | || |||||||||||| |||| || |||| |||| || ||    
T  3250403 tgtttggaaggaaagaaacaacaggatcttcaaagacaaagcataagacttggaacaactttttgacaatgtaaagcttgtgtcctttttttggttacag 3250304  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaa 732  Q
    ||  ||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  3250303 gctaataggctaaattcagctttcagttataatgactggtggcggcaccctttaa 3250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 579 - 756
Target Start/End: Original strand, 33560295 - 33560470
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||| |  ||| | |||| ||||||    ||||||   |||||| ||||||  ||||| ||||| ||| |||||||| | | ||    
T  33560295 gtttggaaggaaagaaacaataggatcttcaaaagcaaagctctagatttggttcaattagtagaca--gtaaaatttgtatctatttcttggttgaggg 33560392  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagt 756  Q
     | ||||| ||||||| ||||||||||||||||||| |||||| |||||||||| ||||||| |||||| | ||||||    
T  33560393 tgaataggctaacttcagctttcagttataatgacttgtggcgacaccctttaatttgtatgggtgttagggagtagt 33560470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 757
Target Start/End: Complemental strand, 10235076 - 10234979
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagtt 757  Q
    |||| |||||||||||||||  ||| |   |||| ||| |||||||| |||||||||||||| ||||||||| |||| ||| ||||| ||| ||||||    
T  10235076 tcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatgtgtgttttgatgtagtt 10234979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 746
Target Start/End: Original strand, 32116386 - 32116477
Alignment:
Q  655 ttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||| |||||||||||||||| |||  ||| |   |||| | |||||||||| || ||||||||||||||||||||| | |||||| |||||    
T  32116386 ttgtgtctttttcttggctaatggcaaatatgcctactttcactttcagttacaacgactggtggcggcaccctttatcgtgtatgggtgtt 32116477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 9114178 - 9114145
Alignment:
Q  141 ttttcaactataacttttgtttatatttcattct 174  Q
    ||||||||||| ||||||||||||||||||||||    
T  9114178 ttttcaactatcacttttgtttatatttcattct 9114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 18645201 - 18645144
Alignment:
Q  115 taaaaatttcgttcatatacaacaaattttcaactataacttttgtttatatttcatt 172  Q
    |||||||||  || ||||||| ||| ||||||||||| | ||||||||||||||||||    
T  18645201 taaaaatttaatttatatacatcaacttttcaactatcatttttgtttatatttcatt 18645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 709 - 746
Target Start/End: Original strand, 19177327 - 19177364
Alignment:
Q  709 atgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  19177327 atgactggtggcggcaccctttaccatgtatgagtgtt 19177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 642 - 754
Target Start/End: Complemental strand, 30702524 - 30702412
Alignment:
Q  642 gacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatga 741  Q
    ||||||||||||||||| |||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  30702524 gacaatgtaaagtttgtgtctttttcttgattaaaggctaataggctaacttccgctttcagttataatgactggtggcggcaccctttaatttgtatgg 30702425  T
Q  742 gtgttatgaagta 754  Q
    |||||||| ||||    
T  30702424 gtgttatggagta 30702412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 578 - 754
Target Start/End: Complemental strand, 18004660 - 18004484
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||||||||||||  ||| | ||| ||||||||   || |||  ||||   || ||||||||||||||||| |||||||||||| |||||    
T  18004660 tgtttggaaggaaagaaacaacaggatcttcaaagacaaagcagaagacttggaacaacattttgacaatgtaaagtttgtgtctttttcttggttaaag 18004561  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagta 754  Q
    ||  ||||| ||||||| ||||||| |||||||||| |||||||||||||||||| ||||||| |||||||| ||||    
T  18004560 gctaataggctaacttcagctttcaattataatgaccggtggcggcaccctttaatttgtatgggtgttatggagta 18004484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 579 - 756
Target Start/End: Original strand, 6744293 - 6744470
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||| |  ||| | ||||||||||||  ||| |||   |||||| ||||||| |||||||||| ||||||||||| | ||| ||    
T  6744293 gtttggaaggaaagaaacaataggatcttcaaaaacaaagcactggacttgcttcaattactagacaaagtaaagtttgcttctttttcttagttaaggg 6744392  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagt 756  Q
    ||  |||| | ||||| |||||||||||||||||||||||||| ||||| |||| ||||||| |||||| | ||||||    
T  6744393 cgagtaggctcacttcagctttcagttataatgactggtggcgacacccgttaatttgtatgggtgttagggagtagt 6744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 642 - 754
Target Start/End: Original strand, 30288441 - 30288553
Alignment:
Q  642 gacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatga 741  Q
    ||||||||||  ||||| || ||||||| | |||||||  ||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||     
T  30288441 gacaatgtaatatttgtgtcattttcttcgttaaaggctaataggctaacttcagctttcagttataatgacgggtggcggcaccctttaatttgtatgg 30288540  T
Q  742 gtgttatgaagta 754  Q
    |||||||| ||||    
T  30288541 gtgttatggagta 30288553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 756
Target Start/End: Original strand, 6654555 - 6654732
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||| |  ||| | ||||||||||||  ||| |||   |||||| ||||||| |||||||||| |||||||||||   ||| ||    
T  6654555 gtttggaaggaaagaaacaataggatcttcaaaaacaaagcactggacttgcttcaattactagacaaagtaaagtttgcttctttttcttaattaaggg 6654654  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagt 756  Q
    |   |||| | ||||| |||||||||||||||||||||||||| || || |||| ||||||| |||||| | ||||||    
T  6654655 caagtaggctcacttcagctttcagttataatgactggtggcgacatccgttaatttgtatgggtgttagggagtagt 6654732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 756
Target Start/End: Original strand, 6734957 - 6735134
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||| |  ||| | ||||||||||||  ||| |||   |||||| ||||||| |||||||||| |||||||||||   ||| ||    
T  6734957 gtttggaaggaaagaaacaataggatcttcaaaaacaaagcactggacttgcttcaattactagacaaagtaaagtttgcttctttttcttatttaaggg 6735056  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagt 756  Q
    |   |||| | ||||| |||||||||||||||||||||||||| || || |||| ||||||| |||||| | ||||||    
T  6735057 ctagtaggctcacttcagctttcagttataatgactggtggcgacatccgttaatttgtatgggtgttagggagtagt 6735134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 755
Target Start/End: Complemental strand, 23636781 - 23636716
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtag 755  Q
    |||||||||||||||||||| |||||||||  ||||||||||   |||||| |||||||| |||||    
T  23636781 acttccgctttcagttataacgactggtggatgcaccctttattatgtatgggtgttatggagtag 23636716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 746
Target Start/End: Complemental strand, 11961852 - 11961801
Alignment:
Q  695 cgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    ||||||||||||  |||||||||||||||||| |||| |||||||| |||||    
T  11961852 cgctttcagttaccatgactggtggcggcaccttttatcttgtatgggtgtt 11961801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 731
Target Start/End: Complemental strand, 28211216 - 28211175
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcacccttta 731  Q
    ||||| |||||||||||||||||||| |||||||| ||||||    
T  28211216 acttctgctttcagttataatgactgatggcggcatccttta 28211175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 740
Target Start/End: Complemental strand, 28033849 - 28033688
Alignment:
Q  579 gtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaagg 678  Q
    |||||||||||||||||||||||  |  ||||||||||||    |||| || | |||||| |||| |||||||| ||| | ||||| |||||||| ||||    
T  28033849 gtttggaaggaaagaaacaacaaggtttttaaaaacaaagtgcaggatgtggctcaattagtagataatgtaaaatttttgtctttctcttggctgaagg 28033750  T
Q  679 cgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatg 740  Q
    |  ||| | | |||||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  28033749 ctaatatgctcacttccgctttcagttataatgactgatggcggtaccccttaatttgtatg 28033688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 660 - 758
Target Start/End: Original strand, 54264839 - 54264936
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagttt 758  Q
    |||||||||||||||||| |  ||||| ||||||||||||||| |||||||||| ||||||||||||| |||  ||||||| |||||||| ||||||||    
T  54264839 tctttttcttggctaaagactaataggttaacttccgctttcaattataatgacgggtggcggcaccc-ttattttgtatgggtgttatggagtagttt 54264936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 651 - 756
Target Start/End: Complemental strand, 31888081 - 31887976
Alignment:
Q  651 aagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatga 750  Q
    |||||||| |||||||||||| |||||||  |||   ||||||| ||||| | |||||||||| |||||||||||||||| | || |||||||||||||     
T  31888081 aagtttgtgtctttttcttgggtaaaggctaataaattaacttcagcttttaattataatgaccggtggcggcacccttttatttatatgagtgttatgg 31887982  T
Q  751 agtagt 756  Q
    ||||||    
T  31887981 agtagt 31887976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 642 - 754
Target Start/End: Original strand, 11294968 - 11295080
Alignment:
Q  642 gacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatga 741  Q
    ||||||||||||||||| ||||| | |||| |||||||  ||||  | ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||     
T  11294968 gacaatgtaaagtttgtgtctttcttttggttaaaggctaatagccttacttcagctttcagttatagtgattggtggcggcatcctttaatttgtatgg 11295067  T
Q  742 gtgttatgaagta 754  Q
     ||||||| ||||    
T  11295068 atgttatggagta 11295080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 624 - 754
Target Start/End: Complemental strand, 31882211 - 31882088
Alignment:
Q  624 gatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggc 723  Q
    |||||||||||| | ||||| || || |||||||| |||||||||||| |||| ||  ||||| |||       ||| ||||||||||||| ||||||||    
T  31882211 gatttgacacaacttttagataaagtgaagtttgtgtctttttcttgggtaaaagctaataggctaa-------ttttagttataatgactcgtggcggc 31882119  T
Q  724 accctttaacttgtatgagtgttatgaagta 754  Q
    ||||||||| |||||||||||||||| ||||    
T  31882118 accctttaatttgtatgagtgttatggagta 31882088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 746
Target Start/End: Original strand, 30828983 - 30829039
Alignment:
Q  690 acttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    |||| ||||||||||||||||||||||||||| || || || |||||||||||||||    
T  30828983 actttcgctttcagttataatgactggtggcgacatccgttgacttgtatgagtgtt 30829039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 745
Target Start/End: Original strand, 20769430 - 20769487
Alignment:
Q  688 taacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgt 745  Q
    ||||||||||||| | ||||||||||||||||| ||| ||||||| |||||| |||||    
T  20769430 taacttccgctttaaattataatgactggtggcagcatcctttaatttgtataagtgt 20769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 8502574 - 8502630
Alignment:
Q  132 tacaacaaattttcaactataacttttgtttatatttcattctagaggaagtacaat 188  Q
    |||| |||||||||| |||| | ||||||||||||||||||||||| | ||||||||    
T  8502574 tacatcaaattttcatctatcatttttgtttatatttcattctagatggagtacaat 8502630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 660 - 748
Target Start/End: Complemental strand, 22757551 - 22757463
Alignment:
Q  660 tctttttcttggctaaaggcgcatagggtaacttccgctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttat 748  Q
    ||||||||||||||||||||  ||| |   |||| ||| |||| ||||||  ||||||||||||| ||||||  |||||||||||||||    
T  22757551 tctttttcttggctaaaggcaaatatgtctactttcgccttcacttataacaactggtggcggcatcctttacattgtatgagtgttat 22757463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 758
Target Start/End: Original strand, 9167012 - 9167073
Alignment:
Q  697 ctttcagttataatgactggtggcggcaccctttaacttgtatgagtgttatgaagtagttt 758  Q
    ||||||||||  |||||||||||||||||||||||   |||||| |||||| | ||||||||    
T  9167012 ctttcagttactatgactggtggcggcaccctttattatgtatgggtgttaaggagtagttt 9167073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 578 - 720
Target Start/End: Original strand, 1833 - 1975
Alignment:
Q  578 tgtttggaaggaaagaaacaacaaaatcattaaaaacaaagcatgggatttgacacaattattagacaatgtaaagtttgtttctttttcttggctaaag 677  Q
    |||||||||||||||||| ||||  ||   ||||||||||||    ||||||   || ||||||||||||||||||||| |||||||||||||| ||||     
T  1833 tgtttggaaggaaagaaataacaggatttgtaaaaacaaagctcatgatttggttcacttattagacaatgtaaagtttatttctttttcttggttaaaa 1932  T
Q  678 gcgcatagggtaacttccgctttcagttataatgactggtggc 720  Q
    ||  ||| | | ||||||| |||||||||||||||||||||||    
T  1933 gcaaatatgttgacttccgttttcagttataatgactggtggc 1975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 746
Target Start/End: Original strand, 249667 - 249702
Alignment:
Q  711 gactggtggcggcaccctttaacttgtatgagtgtt 746  Q
    ||||||||||||||||||||| ||||||||||||||    
T  249667 gactggtggcggcaccctttaccttgtatgagtgtt 249702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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