View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5878-Insertion-3 (Length: 965)
Name: NF5878-Insertion-3
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 813; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 8 - 864
Target Start/End: Original strand, 21181570 - 21182426
Alignment:
| Q |
8 |
attattaccgtcttgaatatcagttgagatgttctttagagtctgtacttgatcattccacaacttgcagttgccgttaaaatcataagcataagcaaca |
107 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181570 |
attattacggtcttgaatttcagttgagatgttcttcagagtctgtacttgatcattccacaacttgcagttgccgttaaaatcataagcataagcaaca |
21181669 |
T |
|
| Q |
108 |
caagaacaattggtgtaacaagtgttgttacactgggagagcgcatcgaactgtaggttcacttcgtatggaggtaattcaactgaactgaaacgtttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
21181670 |
caagaacaattggtgtaacaagtgttgttacactgtgagagcgcatcgaactgtaggttcacttcatatggaggtaattcaactaaactgaaacgtttga |
21181769 |
T |
|
| Q |
208 |
atccatctatgctatttttactgctgcaggataattcgtttatcctgacacatccagctgacctattcccctttctccaagaatcagcatcaaacggttc |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181770 |
atccatctatgctatttttactgttgcaggataattcgtttatcctgacacatccagctgacctattcccctttctccaagaatcagcatcaaacggttc |
21181869 |
T |
|
| Q |
308 |
aaaaccattgagacagtgacaagggtcacgatcttgcgaattacaaatggaaaaaattccacaagaattgtttgttccgcacttggatgattgtagagaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181870 |
aaaaccattgagacagtgacaagggtcgcgatcttgcgaattacaaatggaaaaaattccacaagaattgtttgttccgcacttggatgattgtagagaa |
21181969 |
T |
|
| Q |
408 |
acccaacgcttagattcctctgaccagccttggtatttaagatccccagacacttccaataccaacctagaattgctaccgattgaaagtgtgtcatggt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181970 |
acccaacgcttagattcctctgaccagccttggtatttaagatccccagacacttccaataccaacctagaattgctaccgattgaaagtgtgtcatggt |
21182069 |
T |
|
| Q |
508 |
ctcttttgagttgcaaatccactcgatttaaaacaccctgaatagataaattggaattaccatcaacccataacacattagaacctttatttatggttag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182070 |
ctcttttgagttgcaaatccactcgatttaaaacaccctgaatagataaattggaattaccatcaacccataacacattagaacctttatttatggttag |
21182169 |
T |
|
| Q |
608 |
actcgccatgccaacatcatattggagagtatacggtccaggagcagggtcttctgcagttgtccatgatctcaaagacaaagtgtaccctgtgttaata |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182170 |
actcgccatgccaacatcatattggagagtatacggtccaggagcagggtcttctgcagttgtccatgatctcaaagacaaagtgtaccctgtgttaata |
21182269 |
T |
|
| Q |
708 |
tcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataaaatcgctttgttggaggcgttcaatagtaccaagtttc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
21182270 |
tcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataaaatctgtttgttagaggcgttcaatagtaccaagtttc |
21182369 |
T |
|
| Q |
808 |
ctgagtccaagagcgttgcataggtattatagttgttgtttggaacgttggtcacga |
864 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182370 |
ctgagtccaagagcgttgcataggtattatagttgttgtttggaacgttggtcacga |
21182426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 670 - 833
Target Start/End: Complemental strand, 23177729 - 23177566
Alignment:
| Q |
670 |
tccatgatctcaaagacaaagtgtaccctgtgttaatatcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataa |
769 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||| | |||||| || |||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
23177729 |
tccatgatctcaatgaccaagtgtgtcctgtgtcagtatcgtagcctatgttcattccaggcaaaagggtatctgtggggtgatcaaaactctgccataa |
23177630 |
T |
|
| Q |
770 |
aatcgctttgttggaggcgttcaatagtaccaagtttcctgagtccaagagcgttgcataggta |
833 |
Q |
| |
|
||| |||| ||| || |||| |||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
23177629 |
aattgcttggttagaattattcaccagtaccaagtttcctgtgtccaagagggttgcgtaggta |
23177566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 23178092 - 23177945
Alignment:
| Q |
316 |
tgagacagtgacaagggtcacgatcttgcgaattacaaatggaaaaaattccacaagaattgtttgttccgcacttggatgattgtagagaaacccaacg |
415 |
Q |
| |
|
||||||| |||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||| | ||| | ||||| ||||| ||| ||| | |
|
|
| T |
23178092 |
tgagacattgacaagggtcaggagtttgcggattacaaatggaaaaaaatccacatgaattgtttgtcacacacgttgatgaccgtagaaaaatccattg |
23177993 |
T |
|
| Q |
416 |
cttagattcctctgaccagccttggtatttaagatccccagacacttc |
463 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
23177992 |
cttagattcctcataccaggcttggtatttaagatccccagacgcttc |
23177945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 670 - 833
Target Start/End: Complemental strand, 23186858 - 23186695
Alignment:
| Q |
670 |
tccatgatctcaaagacaaagtgtaccctgtgttaatatcgtgtccgatgttcattccaggtaaaagggtatccgtggggtgattaaaactctgccataa |
769 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| | |||||||||| | | |||||||||||||||||||||| ||||||| || ||| ||||||||||| |
|
|
| T |
23186858 |
tccatgatctcaatgaccaagtacgtcctgtgtaagtatcgtgtcctaaggtcattccaggtaaaagggtatcggtggggttatcaaagctctgccataa |
23186759 |
T |
|
| Q |
770 |
aatcgctttgttggaggcgttcaatagtaccaagtttcctgagtccaagagcgttgcataggta |
833 |
Q |
| |
|
||| ||| ||| || |||| |||||||||||||||| |||||| || ||||| |||||| |
|
|
| T |
23186758 |
aattacttggttagacttattcaccagtaccaagtttcctgtgtccaacagggttgcgtaggta |
23186695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 878 - 945
Target Start/End: Complemental strand, 23177506 - 23177439
Alignment:
| Q |
878 |
tccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttgaaatgcgt |
945 |
Q |
| |
|
|||||||||||| ||||||||||||||| | | ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
23177506 |
tccatctatgattacaatattaccatcatggtcaatggtaagaaacaccgaggatgtttgaaatgcgt |
23177439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 485
Target Start/End: Complemental strand, 23187294 - 23187055
Alignment:
| Q |
246 |
tttatcctgacacatccagctgacctattcccctttctccaagaatcagcatcaaacggttcaaaaccattgagacagtgacaagggtcacgatcttgcg |
345 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| ||||||||||| | |||| || ||| ||||| | |||||| ||||||| ||| | ||| | |
|
|
| T |
23187294 |
tttattctgacacatcccgctgacctatcccccttactccaagaatcggaatcatacttttcgaaaccgtagagacattgacaagcatcaacagcttttg |
23187195 |
T |
|
| Q |
346 |
aattacaaatggaaaaaattccacaagaattgtttgttccgcacttggatgattgtagagaaacccaacgcttagattcctctgaccagccttggtattt |
445 |
Q |
| |
|
| |||||| |||||| |||||| ||||||||||| | |||| | | |||||| ||| ||| || || ||||||| |||||| |||||||||| |
|
|
| T |
23187194 |
gagtacaaacagaaaaatgtccacatgaattgtttgtcacacactgataaaactgtagaaaaatccattgcctatattcctcggaccaggcttggtattt |
23187095 |
T |
|
| Q |
446 |
aagatccccagacacttccaataccaacctagaattgcta |
485 |
Q |
| |
|
||||||||||||| |||| |||| |||| |||||||||| |
|
|
| T |
23187094 |
aagatccccagacgcttctaatataaaccgagaattgcta |
23187055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 23187519 - 23187428
Alignment:
| Q |
27 |
tcagttgagatgttctttagagtctgtacttgatcattccacaacttgcagttgccgtt---aaaatcataagcataagcaacacaagaaca |
115 |
Q |
| |
|
||||| ||| ||||||| |||||| |||||||||||||||||| | ||||||| ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
23187519 |
tcagtcgaggtgttcttcagagtcggtacttgatcattccacagcatgcagttaccgttagaaatatcataagcataaagaacacaagaaca |
23187428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 878 - 938
Target Start/End: Complemental strand, 23186644 - 23186584
Alignment:
| Q |
878 |
tccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttga |
938 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
23186644 |
tccatctatgatgacaatgttaccatcatcgtgaatggtaagaaacgccgaggatgtttga |
23186584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 23178350 - 23178273
Alignment:
| Q |
43 |
ttagagtctgtacttgatcattccacaacttgcagttgccgt---taaaatcataagcataagcaacacaagaacaat |
117 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23178350 |
ttagagtcggtacttgatcattccataacatgcaggcaccgtcaaaaaaatcataagcataagcaacacaagagcaat |
23178273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University