View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5878-Insertion-4 (Length: 949)
Name: NF5878-Insertion-4
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878-Insertion-4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 841; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 8 - 949
Target Start/End: Complemental strand, 33825309 - 33824363
Alignment:
| Q |
8 |
agagaataccaccactcctacacaaagaatgctgctgatcctgtggag--ctcacttacttctgcaacttagacctccttcatagcacaattcctgtgat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825309 |
agagaataccaccactcctacacaaagaatgctgctgttcctgtggagagctcacttacttctgcaacttagacctccttcatagcacaattcctgtgat |
33825210 |
T |
|
| Q |
106 |
aactgataagaaatggatctgttgttagcatatatatgcaaatatatagataaatgctactttaagtactaaggacctgtttgtattgaattatttgagt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33825209 |
aactgataagaaatggatctgttgttagcatatatatgcaaatatatagataaatgccactttaagtactaaggatctgtttgtattgaattatttgagt |
33825110 |
T |
|
| Q |
206 |
tcatatactaacataagcctggagagactgactgtttgagagagcttatgacatgtctataagctctacaagatagtttatatgaacaggttataacctt |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825109 |
tcatatactaacataagcccggagagactg----tttgagagagcttatgacatgtctataagctctacaagatagtttatatgaacaggttataacctt |
33825014 |
T |
|
| Q |
306 |
atatgaaaatagtttcaccttatttccataagcatttatatgataaacgtttgtgatatacacacttggttaagctgttatccgaacaaaacgtaagtaa |
405 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33825013 |
atttgaaaatagtttcaccttatttccataagcatttatatgataaacgtttgtgatatacacacttggttaagctgttatctgaacaaaacataagtaa |
33824914 |
T |
|
| Q |
406 |
ctagtatagcatgcaatgaaaaagaatgagat---gagagggatagatgaacatcttaccatactttctttgttaacagttgtttctccttgtccaaaac |
502 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824913 |
ctagtatagcatgcaatgaaaaagaattagattatgagagggatagatgaacatcttaccatactttctttgttaacagttgtttctccttgtccaaaac |
33824814 |
T |
|
| Q |
503 |
taggcactgtttggttagcagcagatttctgcattttttgtttctccttgtctttcttagatgcacttgatctctttaggcctaatcgctctttccacct |
602 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824813 |
taggcactgtttggttagcagcagacttctgcattttttgtttctccttgtctttcttagatgcacttgatctctttaggcctaatcgctctttccacct |
33824714 |
T |
|
| Q |
603 |
gcttaaactctttggccattttggtgaatcatcatcattaagtagttcatctcttatagtcaccttcttggaaccttcactactgagaggtaacaacatg |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824713 |
gcttaaactctttggccattttggtgaatcatcatcattaagtagttcatctcttatagtcaccttcttggaaccttcactactgagaggtaacaacatg |
33824614 |
T |
|
| Q |
703 |
cccttaaaaaaggcttgatctgctgatatcatagaatagtttttgacagagaattcgaaatccgaagagacaggagcttctctgtatatgttttcatgtt |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824613 |
cccttaaaaaaggcttgatctgctgatatcatagaatagtttttgacagagaattcgaaatccgaagagacaggagcttctctgtatatgttttcatgtt |
33824514 |
T |
|
| Q |
803 |
tgattgcttgttggctaacaac-aaatcattggagaaggaaattcttggatccatggttaaattagctcatgcgctacacagattttgatgcttattgtt |
901 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824513 |
tgattgcttgttggctaacaacaaaatcattggagaaggaaattcttggatccatggttaaattagctcatgcgctacacagattttgatgcttattgtt |
33824414 |
T |
|
| Q |
902 |
g-ata-tgttcgctttgaagggttagttt-cacatgcagatgtttaccttt |
949 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33824413 |
gaatattgttcgctttgaagggttagtttccacatgcagatgtttaccttt |
33824363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 35800 - 35851
Alignment:
| Q |
235 |
gactgtttgagagagcttatgacatgtctataagctctacaagatagtttat |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
35800 |
gactgtttgagagagcttatgacatgtccataagctctccaggatagtttat |
35851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 34744189 - 34744140
Alignment:
| Q |
173 |
actaaggacctgtttgtattgaattatttgagttcatatactaacataag |
222 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| | || |||||||||||| |
|
|
| T |
34744189 |
actaaggacctgtttgaattgaataatttgagcttatctactaacataag |
34744140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University