View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5878_high_1 (Length: 670)
Name: NF5878_high_1
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878_high_1 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 15 - 662
Target Start/End: Complemental strand, 33825309 - 33824661
Alignment:
| Q |
15 |
agagaataccaccactcctacacaaagaatgctgctgatcctgtggag--ctcacttacttctgcaacttagacctccttcatagcacaattcctgtgat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825309 |
agagaataccaccactcctacacaaagaatgctgctgttcctgtggagagctcacttacttctgcaacttagacctccttcatagcacaattcctgtgat |
33825210 |
T |
|
| Q |
113 |
aactgataagaaatggatctgttgttagcatatatatgcaaatatatagataaatgctactttaagtactaaggacctgtttgtattgaattatttgagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33825209 |
aactgataagaaatggatctgttgttagcatatatatgcaaatatatagataaatgccactttaagtactaaggatctgtttgtattgaattatttgagt |
33825110 |
T |
|
| Q |
213 |
tcatatactaacataagcctggagagactgactgtttgagagagcttatgacatgtctataagctctacaagatagtttatatgaacaggttataacctt |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825109 |
tcatatactaacataagcccggagagactg----tttgagagagcttatgacatgtctataagctctacaagatagtttatatgaacaggttataacctt |
33825014 |
T |
|
| Q |
313 |
atatgaaaatagtttcaccttatttcaataagcatttatatgataaacgtttgtgatatacacacttggttaagctgttatccgaacaaaacgtaagtaa |
412 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33825013 |
atttgaaaatagtttcaccttatttccataagcatttatatgataaacgtttgtgatatacacacttggttaagctgttatctgaacaaaacataagtaa |
33824914 |
T |
|
| Q |
413 |
ctagtatagaatgcaatgaaaaagaatgagat---gagagggatagatgaacatcttaccatactttctttgttaacagttgtttctccttgtccaaaac |
509 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824913 |
ctagtatagcatgcaatgaaaaagaattagattatgagagggatagatgaacatcttaccatactttctttgttaacagttgtttctccttgtccaaaac |
33824814 |
T |
|
| Q |
510 |
taggcactgtttggttagcagcagatttctgcattttttgtttctccttgtctttcttagatgcacttgatctctttaggcctaatcgctctttccacct |
609 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824813 |
taggcactgtttggttagcagcagacttctgcattttttgtttctccttgtctttcttagatgcacttgatctctttaggcctaatcgctctttccacct |
33824714 |
T |
|
| Q |
610 |
gcttaaactctttggccattttggtgaatcatcatcattaagtagttcatctc |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824713 |
gcttaaactctttggccattttggtgaatcatcatcattaagtagttcatctc |
33824661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35800 - 35851
Alignment:
| Q |
242 |
gactgtttgagagagcttatgacatgtctataagctctacaagatagtttat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
35800 |
gactgtttgagagagcttatgacatgtccataagctctccaggatagtttat |
35851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 34744189 - 34744140
Alignment:
| Q |
180 |
actaaggacctgtttgtattgaattatttgagttcatatactaacataag |
229 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| | || |||||||||||| |
|
|
| T |
34744189 |
actaaggacctgtttgaattgaataatttgagcttatctactaacataag |
34744140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 9104217 - 9104189
Alignment:
| Q |
249 |
tgagagagcttatgacatgtctataagct |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9104217 |
tgagagagcttatgacatgtctataagct |
9104189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University