View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5878_high_6 (Length: 293)

Name: NF5878_high_6
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5878_high_6
NF5878_high_6
[»] chr1 (1 HSPs)
chr1 (1-293)||(40310988-40311280)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 40310988 - 40311280
Alignment:
Q  1 gattctcatgaaccagttggtaattgttactgttattaattgtattgaagtccaatctgtttggcaggtgctgctctgagtcagttataacaggaagtct 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40310988 gattctcatgaaccagttggtaattgttactattattaattgtattgaagtccaatctgtttggcaggtgctgctctgagtcagttataacaggaagtct 40311087  T
Q  101 ccttaaagcaacccgatcacgtaagaactccgcagaaaattcttcaccggtctgtagacatatattatcttcatcgtctttatcagaagaggttatgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311088 ccttaaagcaacccgatcacgtaagaactccgcagaaaattcttcaccggtctgtagacatatattatcttcatcgtctttatcagaagaggttatgtca 40311187  T
Q  201 ctaaacacaacacttgttgtacctttatattgatagcctgaaattccagggtcctcattactcatgattgaaaaatatacagttagcttaacc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311188 ctaaacacaacacttgttgtacctttatattgatagcctgaaattccagggtcctcattactcatgattgaaaaatatacagttagcttaacc 40311280  T

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