View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5878_low_2 (Length: 567)
Name: NF5878_low_2
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 216 - 541
Target Start/End: Original strand, 6199368 - 6199693
Alignment:
| Q |
216 |
atgtttcacttgagttttaccacaattacaagattatccgaaaacccactataactaactatataacaataacatgttggttacaatatttaaaaataaa |
315 |
Q |
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| T |
6199368 |
atgtttcacttgagttttaccacaattacaagattatccgaaaacccactataactaactatataacaataacatgttggttacaatatttaaaaataaa |
6199467 |
T |
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| Q |
316 |
ataaaattatattgcacaatggaggagattttctttattttaaaaatcggaataagcatattttnnnnnnnnnnnnnnnnnnnnnntcagctgaaattta |
415 |
Q |
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| T |
6199468 |
ataaaattatattgcacaatggaggagattttctttattttaaaaatcggaataagcatattttataaaataaaaaatataaaaaatcagctgaaattta |
6199567 |
T |
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| Q |
416 |
agttcggttccactagaaaatgtagcacctttgcgagtcaatccatatagagtcacttaaaaacatttattttgctgaaattaagtgcgaaactatgtgt |
515 |
Q |
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| T |
6199568 |
agttcggttccactagaaaatgtagcacctttgcgagtcaatccatatagagtcacttaaaaacatttattttgctgaaattaagtgcgaaactatgtgt |
6199667 |
T |
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| Q |
516 |
gtgtatttgaagacaacatgtatatg |
541 |
Q |
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| T |
6199668 |
gtgtatttgaagacaacatgtatatg |
6199693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 6199168 - 6199299
Alignment:
| Q |
17 |
ttaatcaagtaaccatagttagttagttgtatttcatcagaaaagtttgtgatgttttgcatttgtgttaataaaagacac-atgttacataatcactct |
115 |
Q |
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| T |
6199168 |
ttaatcaagtaaccatagttacttagttgcatttcatcagaaaagtttgtgatgttttgcatttgtgttaataaaagacacaatgttacataatcactct |
6199267 |
T |
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| Q |
116 |
agttgaataaacattttacaatccaataatca |
147 |
Q |
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| T |
6199268 |
agttgaataaacattttacaatccaataatca |
6199299 |
T |
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