View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5878_low_3 (Length: 421)
Name: NF5878_low_3
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 131 - 275
Target Start/End: Original strand, 38879176 - 38879320
Alignment:
| Q |
131 |
agagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggacttgttttattatttt |
230 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38879176 |
agagttatgctatattgtacgaaacaatttgtcgtgcatgccacacgaatgcacacttatctttacaaactctttgtttttggacttgttttattatttt |
38879275 |
T |
|
| Q |
231 |
aatattaatcatagcaaataattcttatttcttgtgccaccgcca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38879276 |
aatattaatcatagcaaataattcttatttctagtgccaccgcca |
38879320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 38879313 - 38879412
Alignment:
| Q |
306 |
caccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatgaagcacaaaacagatgagaggtaggtagtg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38879313 |
caccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatgaagcacaaaatagatgagaggtaggtagtg |
38879412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 239 - 401
Target Start/End: Complemental strand, 26864304 - 26864148
Alignment:
| Q |
239 |
tcatagcaaataattcttatttcttgtgccaccgccaaatcacctctatacttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccat |
338 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26864304 |
tcatagcaaataattcttatttctagtgccaccgccaaatcacatatatacttgccgtcatctttgacaccaccattgtcatgttgcatcccattgccat |
26864205 |
T |
|
| Q |
339 |
ggcttatacaaaaatcatgagagagatcagagcaatgaagcacaaaacagatgagaggtaggt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26864204 |
ggcttatacaaaaatcatgagagagatcagagc------gcacaaaacagatgagaggtaggt |
26864148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 26864379 - 26864304
Alignment:
| Q |
132 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26864379 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgt |
26864304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 44634284 - 44634175
Alignment:
| Q |
28 |
taaggtagttaaagaaagatgggggaggtttaatacacatttatttannnnnnnnngacagaaacat-------gtttagatatgctaccaatgtactgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44634284 |
taaggtagttaaagaaagatgggggaggcttaatacacatttattt-tctttttttgacagaaacatcaaacatgtttagatatgctaccaatgtactgt |
44634186 |
T |
|
| Q |
121 |
cttaaaattaa |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
44634185 |
cttaaaattaa |
44634175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 38282821 - 38282783
Alignment:
| Q |
358 |
agagagatcagagcaatgaagcacaaaacagatgagagg |
396 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
38282821 |
agagagattagagcaatgaagcacaaaacaggtgagagg |
38282783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 290 - 405
Target Start/End: Complemental strand, 25910879 - 25910764
Alignment:
| Q |
290 |
ttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatgaagcacaaaacaga |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25910879 |
ttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatgaagcacaaaacaga |
25910780 |
T |
|
| Q |
390 |
tgagaggtaggtagtg |
405 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25910779 |
tgagaggtaggtagtg |
25910764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 25910964 - 25910879
Alignment:
| Q |
132 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25910964 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggactt |
25910879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University