View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5878_low_5 (Length: 330)
Name: NF5878_low_5
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 33824402 - 33824724
Alignment:
| Q |
8 |
cgaagaatattcaacaataagcatcaaaatctgtgtagcgcatgagctaatttaaccatggatccaagaatttccttctccaatgattttgttgttagcc |
107 |
Q |
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| T |
33824402 |
cgaacaatattcaacaataagcatcaaaatctgtgtagcgcatgagctaatttaaccatggatccaagaatttccttctccaatgattttgttgttagcc |
33824501 |
T |
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| Q |
108 |
aacaagcaatcaaacatgaaaacatatacagagaagctcctgtctcttcggatttcgaattctctgtcaaaaactattctatgatatcagcagatcaagc |
207 |
Q |
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| T |
33824502 |
aacaagcaatcaaacatgaaaacatatacagagaagctcctgtctcttcggatttcgaattctctgtcaaaaactattctatgatatcagcagatcaagc |
33824601 |
T |
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| Q |
208 |
cttttttaagggcatgttgttacctctcagtagtgaaggttccaagaaggtgactataagagatgaactacttaatgatgataattcaccaaaatggcta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
33824602 |
cttttttaagggcatgttgttacctctcagtagtgaaggttccaagaaggtgactataagagatgaactacttaatgatgatgattcaccaaaatggcca |
33824701 |
T |
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| Q |
308 |
aagagtttaagcaggtggaaaga |
330 |
Q |
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||||||||||||||||||||||| |
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| T |
33824702 |
aagagtttaagcaggtggaaaga |
33824724 |
T |
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