View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5878_low_9 (Length: 234)
Name: NF5878_low_9
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5878_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 20930669 - 20930509
Alignment:
| Q |
11 |
aagaatatttattcaagttacgtctctcagacgttgaatattaatttaaagttaatattgtagcatggctttcgttgtaaaaggctgcaaattcacattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20930669 |
aagaatatttattcaagttacgtctctcagacgttgaatattaatttaaagttaatattgtagcatggctttcgttgcaaaaggctgcaaattcacattt |
20930570 |
T |
|
| Q |
111 |
atcttctcaaaatgagataaaggggaatgctatacttgttgatccacaacaaatccttcta |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20930569 |
ctcttctcaaaatgagataaaggagaatgctatacttgttgatccacaacaaatccttcta |
20930509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University