View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879-Insertion-1 (Length: 871)
Name: NF5879-Insertion-1
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 19 - 871
Target Start/End: Complemental strand, 10333535 - 10332701
Alignment:
| Q |
19 |
ttaagatgattactcatgaacttggtcaccatttcaactgaatagcgaatattcggtttgctttgacatagatacgtaccttagtgatccaataagcttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
10333535 |
ttaagatgattactcatgaacttggtcaccatttcaactgaatagcgaatattcggtctgctttgacatagatac----cttagcgattcaataagcttc |
10333440 |
T |
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| Q |
119 |
ctgaatagttttggatcaacactttcttatttttcgtttacttcatttctgatattaatatatgttggagtggtagctgaattgcaatccaacatattga |
218 |
Q |
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|||||||| |||||||||||||||||| |||||| || ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
10333439 |
atgaatagtgttggatcaacactttcttctttttctttcacttcatttatgatattaatat--gtt--agtggtagctgaattgcaatccaacatattga |
10333344 |
T |
|
| Q |
219 |
tccagatattgaacct-ttcagaatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgc |
317 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
10333343 |
------------acctcttcaggatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttctgagaatctctattcctaagaaatatgc |
10333256 |
T |
|
| Q |
318 |
aagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccaca |
416 |
Q |
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||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10333255 |
aagctttcctagaccaatcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaatttatcttccagtcaacataaaatcatccaca |
10333156 |
T |
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| Q |
417 |
tacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgt |
516 |
Q |
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| T |
10333155 |
tacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgt |
10333056 |
T |
|
| Q |
517 |
caannnnnnnattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttgattcagaaaggctg |
616 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333055 |
caatttttttattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttgattcagaaaggctg |
10332956 |
T |
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| Q |
617 |
attttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaacttta |
716 |
Q |
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| T |
10332955 |
attttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaacttta |
10332856 |
T |
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| Q |
717 |
gtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaaccc |
816 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10332855 |
gtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaaccc |
10332756 |
T |
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| Q |
817 |
attttaaatcaattgctttctttccaccaggaagcttgatcagttccatgtttga |
871 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10332755 |
atttgaaatcaattgctttctttccaccaggaagcttgattagttccatgtttga |
10332701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 695 - 840
Target Start/End: Original strand, 6372497 - 6372642
Alignment:
| Q |
695 |
tgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaagg |
794 |
Q |
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| T |
6372497 |
tgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttgattcacaatcttcccgtcaggg |
6372596 |
T |
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| Q |
795 |
ttcaatttcagcttaaaaacccattttaaatcaattgctttctttc |
840 |
Q |
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| T |
6372597 |
ttcaatttaaacttgaagacccatttgacatctattgctttctttc |
6372642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 678 - 838
Target Start/End: Complemental strand, 14639885 - 14639725
Alignment:
| Q |
678 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
777 |
Q |
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| T |
14639885 |
ctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttca |
14639786 |
T |
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| Q |
778 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctt |
838 |
Q |
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| T |
14639785 |
caatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttctt |
14639725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 241 - 420
Target Start/End: Complemental strand, 33685066 - 33684886
Alignment:
| Q |
241 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
339 |
Q |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33685066 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33684967 |
T |
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| Q |
340 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
420 |
Q |
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| T |
33684966 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33684886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 241 - 420
Target Start/End: Complemental strand, 33702120 - 33701940
Alignment:
| Q |
241 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
339 |
Q |
| |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33702120 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33702021 |
T |
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| Q |
340 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
420 |
Q |
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| T |
33702020 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33701940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 605
Target Start/End: Complemental strand, 33684740 - 33684702
Alignment:
| Q |
567 |
ttgtttagtttgaacactctatcttctttccctttgatt |
605 |
Q |
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| T |
33684740 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33684702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 605
Target Start/End: Complemental strand, 33701794 - 33701756
Alignment:
| Q |
567 |
ttgtttagtttgaacactctatcttctttccctttgatt |
605 |
Q |
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||||| ||| ||||||||||||||||||||||||||||| |
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| T |
33701794 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33701756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 678 - 862
Target Start/End: Original strand, 12196483 - 12196666
Alignment:
| Q |
678 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
777 |
Q |
| |
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||||| |||||||||| |||| ||||||||||||||||||| || | ||| ||||||||| | || || || |||| | |||||| |||| ||| |||| |
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| T |
12196483 |
ctgatagtttcatgtcttgcatctggtgagaaaactttagtgtaatcaaaaccttccttcta-aataaacctctagccaaaagccttgcttcgtgattca |
12196581 |
T |
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| Q |
778 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctttccaccaggaagcttgatcagttc |
862 |
Q |
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||||||||||||| | || ||||| | ||| |||||| |||||| ||| ||||| || |||||| | ||||||| |||||||| |
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| T |
12196582 |
caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttttttccatctcgaagctttatcagttc |
12196666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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