View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5879-Insertion-2 (Length: 758)
Name: NF5879-Insertion-2
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 24554982 - 24555470
Alignment:
| Q |
8 |
agtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactc |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24554982 |
agtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactc |
24555081 |
T |
|
| Q |
108 |
aactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24555082 |
aactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgctta |
24555181 |
T |
|
| Q |
208 |
tagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24555182 |
tagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgca |
24555281 |
T |
|
| Q |
308 |
attgatgcttattctgttgtatttgttgatgctgcttctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatgaataa |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24555282 |
attaatgcttattctgttgtatttgttgatgctgcttctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatgaataa |
24555381 |
T |
|
| Q |
408 |
gtggagtaattgtatttattcctttcttatgatgaataattctacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24555382 |
gtggagtaattgtatttattcctttcttatgatgaataattgtacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
24555470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 2917004 - 2917335
Alignment:
| Q |
9 |
gtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactca |
108 |
Q |
| |
|
|||||||| | || ||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| || |||||||| ||||| |
|
|
| T |
2917004 |
gtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactca |
2917103 |
T |
|
| Q |
109 |
actaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttat |
208 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||| |||| |
|
|
| T |
2917104 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttat |
2917203 |
T |
|
| Q |
209 |
agggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaa |
308 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||||||| |||| ||||| | ||| ||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
2917204 |
aggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcag |
2917303 |
T |
|
| Q |
309 |
ttgatgcttattctgttgtatttgttgatgct |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2917304 |
ttgatgcttattctgttgtatttgttgatgct |
2917335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 527 - 736
Target Start/End: Original strand, 24555528 - 24555736
Alignment:
| Q |
527 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctatatgtggcgagat |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
24555528 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctata--tggcgagtt |
24555625 |
T |
|
| Q |
627 |
aattcctcgcgaatcctcacgaatgaccatacagcttgtgctgtatgatttga-tcacaacatgtttaatctatcaaagacatagattaagtattaatca |
725 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||| |||||| || | |||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
24555626 |
aattcctcgtgaatccacacgaatgaccatacagtttgtgctatatgatcggattgacaacatgtttaatctatcaaagacatacattaagtataaatca |
24555725 |
T |
|
| Q |
726 |
tatgcttgatc |
736 |
Q |
| |
|
||||||||||| |
|
|
| T |
24555726 |
tatgcttgatc |
24555736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 2930592 - 2930919
Alignment:
| Q |
9 |
gtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactca |
108 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||| | || |||||||||||| ||||||||||| ||||| |
|
|
| T |
2930592 |
gtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcataatactca |
2930691 |
T |
|
| Q |
109 |
actaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttat |
208 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||| |||| |
|
|
| T |
2930692 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttat |
2930791 |
T |
|
| Q |
209 |
agggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaa |
308 |
Q |
| |
|
||| ||||||||||||||||| ||| || |||||| ||| ||||| | ||| ||| ||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2930792 |
aggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgactgcaa |
2930891 |
T |
|
| Q |
309 |
ttgatgcttattctgttgtatttgttga |
336 |
Q |
| |
|
|||||| |||||||||| |||||||||| |
|
|
| T |
2930892 |
ttgatgtttattctgttctatttgttga |
2930919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 23 - 356
Target Start/End: Original strand, 24566700 - 24567039
Alignment:
| Q |
23 |
ggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttg |
122 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||||||| ||| |||| || ||||||| |||| |||||||||||| |||||||||||||||||| | |
|
|
| T |
24566700 |
ggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcg |
24566799 |
T |
|
| Q |
123 |
gtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttga------aacatggatctggtaatgcttatagggttgg |
216 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||| || ||||||||||||||| | ||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
24566800 |
gtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaacatggatctggtcatgcttataggattgg |
24566899 |
T |
|
| Q |
217 |
attttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgct |
316 |
Q |
| |
|
|||||||||||||||||| || ||||||| || | ||| ||| || || ||||| | || |||||| ||||||||||||| |||| | ||||||| |
|
|
| T |
24566900 |
attttgtttggatacaactggagattgtggttttattgcattggaatttttcaattccgaagatggtggaccacgtttgatttttactgtgaatgatgct |
24566999 |
T |
|
| Q |
317 |
tattctgttgtatttgttgatgctgcttctattaaatctg |
356 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24567000 |
tattctgttgtttttgttgatgctgcttctattaaatctg |
24567039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 20505583 - 20505699
Alignment:
| Q |
35 |
gagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtc |
134 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| || ||||||||||| || ||||| |||| | | | || || ||||||||||||||||| |
|
|
| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggtc |
20505682 |
T |
|
| Q |
135 |
ctgcaaactatcctggt |
151 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20505683 |
gagaaaactatcctggt |
20505699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 24567047 - 24567088
Alignment:
| Q |
373 |
tgcattacctatttagtatgggttttaatgaataagtggagt |
414 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
24567047 |
tgcattgcctatttagtatgagttgtaatgaataagtggagt |
24567088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 13072369 - 13072251
Alignment:
| Q |
33 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtgg |
132 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||| |||| | |||| | || ||||||||||||||| |
|
|
| T |
13072369 |
ttgatatcgagttcgttaggaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtgg |
13072270 |
T |
|
| Q |
133 |
tcctgcaaactatcctggt |
151 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
13072269 |
tccagaaaactatcctggt |
13072251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 664
Target Start/End: Complemental strand, 7998982 - 7998929
Alignment:
| Q |
611 |
ctatatgtggcgagataattcctcgcgaatcctcacgaatgaccatacagcttg |
664 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
7998982 |
ctatatgtcgcgagaatattcctcgtgaatcctcacgaatgacaatacggcttg |
7998929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University