View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879-Insertion-3 (Length: 706)
Name: NF5879-Insertion-3
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 706
Target Start/End: Original strand, 7449002 - 7449700
Alignment:
| Q |
8 |
accttcactcactcttgttcatccaacacagttgagtagagcataagcaatgaagatccagtgtgatgtatgcaacaaaaatgaagcttcattattctgc |
107 |
Q |
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| T |
7449002 |
accttcactcactcttgttcatccaacacagttgagtagagcataagcaatgaagatccagtgtgatgtatgcaacaaaaatgaagcttcattattctgc |
7449101 |
T |
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| Q |
108 |
accgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacaccaccgtctcgctcttcataacccaa |
207 |
Q |
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| T |
7449102 |
accgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacaccaccgtctcgctcttcataacccaa |
7449201 |
T |
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| Q |
208 |
ctcccaaacaacaccctctctgcgatatttgtcaggtacatcaacttttattgacttaactttctcttatatttcgtatcagagttttgttgacttaatt |
307 |
Q |
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| T |
7449202 |
ctcccaaacaacaccctctctgcgatatttgtcaggtacatcaattgttgttgacttaactttcttttatatttcgtataagagttttgttgacttaact |
7449301 |
T |
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| Q |
308 |
ttttcttatagtcaggacgagagtaacatgttgacnnnnnnnncttatgttaggagagaagagcttttgtgttatgtaaacaagacagagcaattctatg |
407 |
Q |
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| T |
7449302 |
ttttcttatagtcaggacgagagtaacatgttgacttttttttcttatgttaggagagaagagcttttgtgttatgtaaacaagacagagcaattctatg |
7449401 |
T |
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| Q |
408 |
caaagattgtgattcatctattcattcagtgaatgaacttacacaaaaacatgataggtttcttcttactggtattaagatttcaactacaaactcatct |
507 |
Q |
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| T |
7449402 |
caaagattgtgattcatctattcattcagtgaatgaacttacacaaaaacatgatagatttcttcttactggtattaagatttcaactacaaactcatct |
7449501 |
T |
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| Q |
508 |
tcttcatcttcatcatcaacaccttcttctgctactaccaagtcaaatcatgttccttcttcttctttgattgaaaaatctactactccttcaccaacat |
607 |
Q |
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| T |
7449502 |
tcttcatcttcatcatcaacaccttcttctgctactaccaagtcaaatcatattccttcttcttctttgattgaaaaatctactactccttcaccaacat |
7449601 |
T |
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| Q |
608 |
ctatggaagaaggaagtggtggttctactatatctcaatacttgattgagactctacctggttggcaagttgatgattttcttgattcttcttctgttc |
706 |
Q |
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| T |
7449602 |
ctatggaagaaggaagtggtggttctactatatctcaatacttgattgagactctacctggttggcaagttgatgattttcttgattcttcttctgttc |
7449700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 52823738 - 52823828
Alignment:
| Q |
93 |
gcttcattattctgcaccgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacacc |
183 |
Q |
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| T |
52823738 |
gcttctttattctgcaccgccgatgaagctgccttatgctccacctgcgaccaccgtgtccaccatgctaacaaactcgcctccaaacacc |
52823828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 24216182 - 24216217
Alignment:
| Q |
244 |
tacatcaacttttattgacttaactttctcttatat |
279 |
Q |
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| T |
24216182 |
tacatcaaattttattgacttaactttctcttatat |
24216217 |
T |
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