View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879-Insertion-5 (Length: 490)
Name: NF5879-Insertion-5
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Complemental strand, 1328668 - 1328187
Alignment:
| Q |
9 |
aatcctcggtaaccctaacgccgacgaaaccgattcactttcatctcccttccccgaaaacgccgacagaaacaccttccctgaactacttccagcgtgg |
108 |
Q |
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| T |
1328668 |
aatcctcggtaaccctaacgccgacgaaaccgattcactttcatctcccttccccgaaaacgccgacagaaacaccttccctgaactacttccagcgtgg |
1328569 |
T |
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| Q |
109 |
atttgtggaagcaacgaattcaaaccaaacacaccacgaatttcgccgtttgatgcaggatcgtgtttgaggaatctggaggatgatgatgcggtggata |
208 |
Q |
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| T |
1328568 |
atttgtggaagcaacgaattcaaaccaaacacaccacgaatttcgccgtttgatgcaggatcgtgtttgaggaatctggaggatgatgatgcggtggata |
1328469 |
T |
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| Q |
209 |
cagcggcggcagtggcggtggttgtggtgcgttgtggaggtggattgataccgttgagccaacgaacgagagcgatacgagatgaacggttaggatcgta |
308 |
Q |
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| T |
1328468 |
ctgcggcggcagtggcggtggttgtggtgcgttgtggaggtggattgataccgttgagccaacgaacgagagcgatacgagatgaacggttaggatcgta |
1328369 |
T |
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| Q |
309 |
ttcgatgcgttcgacgataccgacggaagaagaagtgttgcgcttgagatcgatgactcgatgtaaacgtttatggccgccaccgcggtggaaggaggtg |
408 |
Q |
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| T |
1328368 |
ttcgatgcgttcgacgataccgacggaagaagaagtgttgcgcttgagatcgatgactcgatgtaaacgtttatggccgccgccgcggtggaaggaggtg |
1328269 |
T |
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| Q |
409 |
atgcggccgtaacagttacggccggcggtttttccggcgccgaatgtgaattgtctcagtgatctcttcactcctcctgaca |
490 |
Q |
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| T |
1328268 |
atgcggccgtaacagttacggccggcggtttttccggcgccgaatgtgaattgtctcagtgatctcttcactcctcctgaca |
1328187 |
T |
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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 262058 - 262096
Alignment:
| Q |
105 |
gtggatttgtggaagcaacgaattcaaaccaaacacacc |
143 |
Q |
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| T |
262058 |
gtggatttgtggaagcaacaaattcaaaccaagcacacc |
262096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 2829156 - 2829194
Alignment:
| Q |
105 |
gtggatttgtggaagcaacgaattcaaaccaaacacacc |
143 |
Q |
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| T |
2829156 |
gtggatttgtggaagcaacaaattcaaaccaagcacacc |
2829194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 54591193 - 54591230
Alignment:
| Q |
105 |
gtggatttgtggaagcaacgaattcaaaccaaacacac |
142 |
Q |
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| T |
54591193 |
gtggatttgtggaagcaacaaattcaaaccaagcacac |
54591230 |
T |
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